Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HMY34_RS02195 Genome accession   NZ_CP053482
Coordinates   447045..447548 (+) Length   167 a.a.
NCBI ID   WP_202717687.1    Uniprot ID   -
Organism   Thiothrix subterranea strain Ku-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 442045..452548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMY34_RS02180 (HMY34_02175) pckA 442488..444101 (+) 1614 WP_202717684.1 phosphoenolpyruvate carboxykinase (ATP) -
  HMY34_RS02185 (HMY34_02180) dbpA 444195..445571 (+) 1377 WP_202717685.1 ATP-dependent RNA helicase DbpA -
  HMY34_RS02190 (HMY34_02185) - 445654..447012 (+) 1359 WP_202717686.1 MFS transporter -
  HMY34_RS02195 (HMY34_02190) ssb 447045..447548 (+) 504 WP_202717687.1 single-stranded DNA-binding protein Machinery gene
  HMY34_RS02200 (HMY34_02195) - 447777..448490 (-) 714 WP_202717688.1 hypothetical protein -
  HMY34_RS02205 (HMY34_02200) radC 448528..449199 (-) 672 WP_202717689.1 DNA repair protein RadC -
  HMY34_RS02210 (HMY34_02205) coaBC 449252..450475 (+) 1224 WP_202717690.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HMY34_RS02215 (HMY34_02210) dut 450462..450917 (+) 456 WP_202717691.1 dUTP diphosphatase -
  HMY34_RS02220 (HMY34_02215) - 450921..452321 (+) 1401 WP_202717692.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17790.58 Da        Isoelectric Point: 5.7940

>NTDB_id=444988 HMY34_RS02195 WP_202717687.1 447045..447548(+) (ssb) [Thiothrix subterranea strain Ku-5]
MANGINKVILVGTVGRDPEMKYMPSGDAIANISVATSESWKDKNTGEKKEATEWHNVTFYRGLAKVVGDYVRKGQLLYVE
GSLKTRSWEKDGQKHYRTEVNATDMKMLGGRPGGGMGSGNYDDSSAAPAQRSSNQGAGGGYGGGAPSAPADNASSRGFED
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=444988 HMY34_RS02195 WP_202717687.1 447045..447548(+) (ssb) [Thiothrix subterranea strain Ku-5]
ATGGCAAATGGTATCAACAAAGTCATTCTGGTCGGCACGGTGGGCAGAGACCCTGAGATGAAATACATGCCCAGCGGTGA
CGCAATCGCCAATATCAGTGTCGCCACCAGTGAATCATGGAAAGACAAAAATACCGGCGAGAAGAAAGAAGCCACTGAAT
GGCACAACGTGACTTTTTACCGAGGCTTAGCCAAAGTCGTTGGTGATTATGTTCGCAAAGGCCAATTACTTTACGTCGAA
GGCAGCCTGAAAACCCGTTCGTGGGAAAAAGATGGGCAAAAACACTACCGCACCGAAGTAAACGCCACCGATATGAAAAT
GCTGGGCGGGCGTCCCGGTGGCGGCATGGGTTCGGGCAATTACGACGACTCATCCGCCGCCCCCGCGCAACGCAGCAGCA
ATCAAGGCGCTGGCGGTGGTTACGGCGGCGGTGCGCCATCTGCTCCGGCGGACAATGCCTCCAGCCGTGGCTTTGAAGAC
TTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.045

100

0.515
  ssb Glaesserella parasuis strain SC1401

46.629

100

0.497
  ssb Neisseria meningitidis MC58

45.087

100

0.467
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.467