Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EYQ96_RS01155 Genome accession   NZ_CP053477
Coordinates   140437..140952 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus warneri strain WB224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 127114..142720 140437..140952 within 0
IS/Tn 138633..139805 140437..140952 flank 632


Gene organization within MGE regions


Location: 127114..142720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYQ96_RS01065 (EYQ96_01075) - 127114..127635 (-) 522 WP_023374545.1 terminase small subunit -
  EYQ96_RS01070 (EYQ96_01080) - 127640..127981 (-) 342 WP_023374544.1 helix-turn-helix transcriptional regulator -
  EYQ96_RS01075 (EYQ96_01085) - 127984..128442 (-) 459 WP_023374543.1 pathogenicity island family protein -
  EYQ96_RS01080 (EYQ96_01090) - 128503..129213 (-) 711 WP_023374542.1 hypothetical protein -
  EYQ96_RS01085 (EYQ96_01095) - 129234..129581 (-) 348 WP_023374541.1 hypothetical protein -
  EYQ96_RS01090 (EYQ96_01100) - 129992..130633 (-) 642 WP_023374540.1 pathogenicity island protein -
  EYQ96_RS01095 (EYQ96_01105) - 130635..130997 (-) 363 WP_023374539.1 hypothetical protein -
  EYQ96_RS01100 (EYQ96_01110) - 131308..132777 (-) 1470 WP_023374538.1 virulence-associated E family protein -
  EYQ96_RS01105 (EYQ96_01115) - 132790..133662 (-) 873 WP_023374537.1 primase alpha helix C-terminal domain-containing protein -
  EYQ96_RS01110 (EYQ96_01120) - 133762..134097 (-) 336 WP_023374536.1 hypothetical protein -
  EYQ96_RS01115 (EYQ96_01125) - 134099..134458 (-) 360 WP_023374535.1 hypothetical protein -
  EYQ96_RS01120 (EYQ96_01130) - 134668..134940 (-) 273 WP_023374534.1 DDE transposase family protein -
  EYQ96_RS01125 (EYQ96_01135) - 134940..135155 (-) 216 WP_104681485.1 helix-turn-helix transcriptional regulator -
  EYQ96_RS01130 (EYQ96_01140) - 135347..136270 (+) 924 WP_023374532.1 helix-turn-helix domain-containing protein -
  EYQ96_RS01135 (EYQ96_01145) - 136279..137502 (+) 1224 WP_023374531.1 site-specific integrase -
  EYQ96_RS01140 (EYQ96_01150) - 137665..138555 (+) 891 WP_171484833.1 Abi family protein -
  EYQ96_RS01145 (EYQ96_01155) - 138633..139805 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  EYQ96_RS01150 (EYQ96_01160) rpsR 140151..140393 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  EYQ96_RS01155 (EYQ96_01165) ssbA 140437..140952 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  EYQ96_RS01160 (EYQ96_01170) rpsF 140974..141270 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  EYQ96_RS01165 (EYQ96_01175) - 141646..142467 (+) 822 WP_023374529.1 GH25 family lysozyme -
  EYQ96_RS01170 (EYQ96_01180) - 142529..142720 (+) 192 WP_002451523.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=444914 EYQ96_RS01155 WP_002466536.1 140437..140952(-) (ssbA) [Staphylococcus warneri strain WB224]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=444914 EYQ96_RS01155 WP_002466536.1 140437..140952(-) (ssbA) [Staphylococcus warneri strain WB224]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374