Detailed information NTG0444913

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: IXH55_RS13125
• Genome accession: NZ_CP064772
• Coordinates: 2659016..2659618 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271550.1
• Uniprot ID: P66748
• Organism: Staphylococcus aureus strain TCH32767
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2654016..2664618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXH55_RS13085 (IXH55_13025)	-	2654032..2654151 (+)	120	WP_000840602.1	hypothetical protein	-
IXH55_RS13090 (IXH55_13030)	mreC	2654350..2655192 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
IXH55_RS13095 (IXH55_13035)	mreD	2655192..2655722 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
IXH55_RS13100 (IXH55_13040)	rplU	2655958..2656266 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
IXH55_RS13105 (IXH55_13045)	-	2656272..2656592 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
IXH55_RS13110 (IXH55_13050)	rpmA	2656604..2656888 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
IXH55_RS13115 (IXH55_13055)	obgE	2657242..2658534 (+)	1293	WP_244777067.1	GTPase ObgE	-
IXH55_RS13120 (IXH55_13060)	-	2658547..2659002 (+)	456	WP_000368902.1	ACT domain-containing protein	-
IXH55_RS13125 (IXH55_13065)	ruvA	2659016..2659618 (+)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
IXH55_RS13130 (IXH55_13070)	ruvB	2659650..2660654 (+)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IXH55_RS13135 (IXH55_13075)	queA	2660656..2661681 (+)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IXH55_RS13140 (IXH55_13080)	tgt	2661704..2662843 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
IXH55_RS13145 (IXH55_13085)	yajC	2662862..2663122 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22281.50 Da
• Isoelectric Point: 6.1244

>NTDB_id=444913 IXH55_RS13125 WP_000271550.1 2659016..2659618(+) (ruvA) [Staphylococcus aureus strain TCH32767]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=444913 IXH55_RS13125 WP_000271550.1 2659016..2659618(+) (ruvA) [Staphylococcus aureus strain TCH32767]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAACGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: P66748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.216	99.5	0.43