Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RLCC275e_RS09795 Genome accession   NZ_CP053439
Coordinates   1935561..1936073 (+) Length   170 a.a.
NCBI ID   WP_033182640.1    Uniprot ID   -
Organism   Rhizobium brockwellii strain CC275e     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1930561..1941073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLCC275e_RS09780 (RLCC275e_09870) - 1931068..1931874 (-) 807 WP_033182637.1 DUF72 domain-containing protein -
  RLCC275e_RS09785 (RLCC275e_09875) - 1931899..1932360 (-) 462 WP_033182638.1 GNAT family N-acetyltransferase -
  RLCC275e_RS09790 (RLCC275e_09880) uvrA 1932357..1935278 (-) 2922 WP_033182639.1 excinuclease ABC subunit UvrA -
  RLCC275e_RS09795 (RLCC275e_09885) ssb 1935561..1936073 (+) 513 WP_033182640.1 single-stranded DNA-binding protein Machinery gene
  RLCC275e_RS09800 (RLCC275e_09890) - 1936173..1936820 (-) 648 WP_033182641.1 MarC family protein -
  RLCC275e_RS09805 (RLCC275e_09895) gyrA 1937057..1939894 (+) 2838 WP_033182642.1 DNA gyrase subunit A -
  RLCC275e_RS34600 - 1940060..1940194 (-) 135 WP_260298902.1 hypothetical protein -
  RLCC275e_RS09810 (RLCC275e_09900) - 1940231..1940386 (-) 156 WP_003539654.1 hypothetical protein -
  RLCC275e_RS09815 (RLCC275e_09905) - 1940509..1940796 (-) 288 WP_033182643.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18167.90 Da        Isoelectric Point: 5.3175

>NTDB_id=444902 RLCC275e_RS09795 WP_033182640.1 1935561..1936073(+) (ssb) [Rhizobium brockwellii strain CC275e]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSGAGGNDYGDDYGAPAPSSSPSRGGGGAGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=444902 RLCC275e_RS09795 WP_033182640.1 1935561..1936073(+) (ssb) [Rhizobium brockwellii strain CC275e]
ATGGCTGGTAGTGTGAATAAGGTAATTCTGATTGGAAACGTCGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACGTGGCGCGATCGCAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAGGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAAAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGATCGCTACAGCACGGAAGTGGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGATGGCCGCGGTGAAGGCGGCGGCGCGAGCGGCGGCCGTGGCAGTGGCGCCGGCGGCA
ACGATTATGGCGACGACTACGGTGCCCCGGCTCCCTCCTCATCGCCGAGCCGCGGCGGTGGCGGCGCCGGCGGTAACTTC
TCGCGGGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.512
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.506
  ssb Neisseria gonorrhoeae MS11

39.444

100

0.418
  ssb Neisseria meningitidis MC58

37.989

100

0.4