Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CBX32_RS06330 Genome accession   NZ_CP053417
Coordinates   1409383..1409913 (-) Length   176 a.a.
NCBI ID   WP_000168315.1    Uniprot ID   A0A0K0HGJ5
Organism   Salmonella bongori strain 92-0238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1404383..1414913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBX32_RS06315 - 1404982..1406301 (-) 1320 WP_171922595.1 TolC family protein -
  CBX32_RS06320 - 1406291..1407679 (-) 1389 WP_171922596.1 MotA/TolQ/ExbB proton channel family protein -
  CBX32_RS06325 - 1407676..1408308 (-) 633 WP_079774927.1 hypothetical protein -
  CBX32_RS06330 ssb 1409383..1409913 (-) 531 WP_000168315.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CBX32_RS06335 uvrA 1410161..1412986 (+) 2826 WP_000357727.1 excinuclease ABC subunit UvrA -
  CBX32_RS06340 - 1413118..1413573 (+) 456 WP_171922597.1 hypothetical protein -
  CBX32_RS06345 - 1413560..1413898 (+) 339 WP_171922598.1 hypothetical protein -
  CBX32_RS06350 - 1413899..1414255 (-) 357 WP_000155668.1 MmcQ/YjbR family DNA-binding protein -
  CBX32_RS06355 - 1414258..1414674 (-) 417 WP_038393502.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19131.20 Da        Isoelectric Point: 5.2456

>NTDB_id=444830 CBX32_RS06330 WP_000168315.1 1409383..1409913(-) (ssb) [Salmonella bongori strain 92-0238]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQNGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSTP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=444830 CBX32_RS06330 WP_000168315.1 1409383..1409913(-) (ssb) [Salmonella bongori strain 92-0238]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCTAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAAACGG
AATGGCACCGTGTTGTCATGTTCGGCAAACTGGCGGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCACAGGTGTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAAATGGCCAGGAGCGATATACGACTGAAATTAACGTTCCGCAGAT
TGGCGGCGTGATGCAGATGTTAGGTGGCCGTCAGGGCGGCGGCGCGCCAGCAGGCGGTCAACAGCAGGGCGGTTGGGGTC
AGCCACAACAACCTCAGCAACCGCAGGGCGGCAACCAGTTCAGTGGTGGCGCCCAGTCGCGTCCACAGCAATCCACGCCG
GCTCCGTCTAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0HGJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.739
  ssb Glaesserella parasuis strain SC1401

60.656

100

0.631
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477