Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HL670_RS01550 Genome accession   NZ_CP053398
Coordinates   330261..330797 (+) Length   178 a.a.
NCBI ID   WP_006317814.1    Uniprot ID   -
Organism   Serratia plymuthica strain C-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 325261..335797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL670_RS01535 (HL670_00326) maa 325284..325841 (+) 558 WP_062791597.1 maltose O-acetyltransferase -
  HL670_RS01540 (HL670_00327) - 325876..326928 (-) 1053 WP_004948729.1 NAD(P)-dependent alcohol dehydrogenase -
  HL670_RS01545 (HL670_00328) uvrA 327149..329983 (-) 2835 WP_006328337.1 excinuclease ABC subunit UvrA -
  HL670_RS01550 (HL670_00329) ssb 330261..330797 (+) 537 WP_006317814.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HL670_RS01555 (HL670_00330) - 330860..331609 (-) 750 WP_062791598.1 3-oxoacyl-ACP reductase family protein -
  HL670_RS01560 (HL670_00331) - 331740..332657 (+) 918 WP_062791599.1 LysR family transcriptional regulator -
  HL670_RS01565 (HL670_00332) - 332715..332975 (-) 261 WP_062791600.1 YdgH/BhsA/McbA-like domain containing protein -
  HL670_RS01570 (HL670_00333) - 333292..333960 (+) 669 WP_062791601.1 glutathione S-transferase -
  HL670_RS01575 (HL670_00334) - 334008..334415 (+) 408 WP_004948713.1 VOC family protein -
  HL670_RS01580 - 334536..334772 (-) 237 WP_139281262.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18730.73 Da        Isoelectric Point: 5.2456

>NTDB_id=444785 HL670_RS01550 WP_006317814.1 330261..330797(+) (ssb) [Serratia plymuthica strain C-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQAAGGQGGWGQPQQPQGGNQFSGGQQARPAQNNA
PAASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=444785 HL670_RS01550 WP_006317814.1 330261..330797(+) (ssb) [Serratia plymuthica strain C-1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACTGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGCGTTGTGTTGTTCGGCAAGCTGGCTGAAGTTGCGGGCGAGTATCTGCGTAAAGGTTCCCAGGTGTATATC
GAAGGTGCCCTGCAGACCCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAAGGCGGCGGCGCACCTGCAGGCGGTGGTCAGGCAGCAGGCGGCCAGGGCG
GTTGGGGCCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCGCGCCCAGCGCAGAACAACGCG
CCGGCAGCCAGCAGCAACGAACCGCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.284

100

0.579
  ssb Neisseria meningitidis MC58

45.213

100

0.478
  ssb Neisseria gonorrhoeae MS11

45.213

100

0.478