Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   HLV59_RS01660 Genome accession   NZ_CP053391
Coordinates   350616..354470 (+) Length   1284 a.a.
NCBI ID   WP_171429206.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345616..359470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01630 gmk 345897..346526 (-) 630 WP_125698033.1 guanylate kinase -
  HLV59_RS01635 ispH 346649..347599 (+) 951 WP_016143645.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLV59_RS01640 fimU 347770..348243 (+) 474 WP_031949497.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLV59_RS01645 pilV 348237..348797 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  HLV59_RS01650 pilW 348797..349798 (+) 1002 WP_171429203.1 PilW family protein Machinery gene
  HLV59_RS01655 pilX 349795..350604 (+) 810 WP_171429205.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HLV59_RS01660 pilY1 350616..354470 (+) 3855 WP_171429206.1 PilC/PilY family type IV pilus protein Machinery gene
  HLV59_RS01665 pilY2 354481..354963 (+) 483 WP_171429209.1 type IV pilin protein Machinery gene
  HLV59_RS01670 pilE 354960..355385 (+) 426 WP_171429211.1 type IV pilin protein Machinery gene
  HLV59_RS01675 rpsP 355533..355784 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HLV59_RS01680 rimM 355804..356352 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  HLV59_RS01685 trmD 356395..357150 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HLV59_RS01690 rplS 357370..357738 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  HLV59_RS01695 - 357790..358731 (-) 942 WP_171430564.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 137940.49 Da        Isoelectric Point: 7.5997

>NTDB_id=444680 HLV59_RS01660 WP_171429206.1 350616..354470(+) (pilY1) [Acinetobacter lactucae isolate QL-1]
MKLKLKDFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLALLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYTIRKDSYVKRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAIANADSGIPKSKTNDTTSNPNIVVDRNATNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SASVMSTALGTTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKGDDACSPNQTTNAIAAPGYGNGGFFPTQSAQGVTDSVIAFINNLEKVPLQPLTTGAISVPYDALNPKNLQEY
GYLRALEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSNYNDGGNVFLGGSYAKVP
VPIVGQNETRDEDGNIIKYYYAVQTKIRNLFTDVSAVASDGSLTKISTSGTNLLRIPAAPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGIEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGMIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSSVDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQVFRIDLN
NNQTKTNSTYSSFGVRVVRLANLATNDATYDSSNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNIYGIIDKDFIKKNLMSLTDSELETKDITRSTLRKNPQILRSGETRVAQIFFPNSGTGQNGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFRTKTGTNCPVGASECNTNIIGSGIRGIAFVPKRDVPPVTNSCGKLQLSGNESGTGEWQCTSHLVPARWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=444680 HLV59_RS01660 WP_171429206.1 350616..354470(+) (pilY1) [Acinetobacter lactucae isolate QL-1]
ATGAAACTAAAATTGAAGGATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGCT
AATGACAAGTTCTGTGGTGCAGGCGAGTGATTTACAAATTTATGCTTCCCCTACAGCGGGTAAAAAAACCATTGTGATGA
TGCTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGTTTGGCCCTGCTTAAAAATGGTATGAATGCT
TTTTTAGCCAGCAATAATCCTGTTTTAAATGATACTCGTGTGGGCTTGGGAAATTTCTCTGCCAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACTTTAAATACAGTAGGTTCTCAGCGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGTGGGTCAACACCTTCAGCGCATGCTTATGCAGAAGCTGCTGCTTATTTGATG
GGTACAACAACCTATTCAGAGGCGAATTATACTATTCGAAAAGATAGCTATGTAAAGCGTGTGCGAAAATCCGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGTTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACTTTTAATTATGCGATAGCAAACGCAGATAGTGGCATTCCAAAATCAAAAACAAATGA
TACGACAAGCAATCCAAATATTGTTGTAGATAGAAATGCTACTAACTTAAATGCTATTTACCAATCTCCTTTACCTGCAG
TGGCCAATCGTCAAAGCTGTGATGGGCAGGGTATTTACTTTTTATCAGATGGGGAGCCGAACAATACAACAAATACACGT
TCGGCAAGTGTCATGTCGACGGCCTTAGGCACTACTTTAGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACTAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAGTTTGCAAAACGACTATTTGATAAAACAAAGAATCCTGCCGGAGTTTCTA
TTCAAACAGCATTTGTGGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGT
TCGAGAACCCAATCTGACCGAAAAGGAGATGATGCATGTTCACCCAATCAGACCACAAATGCGATCGCTGCACCTGGTTA
TGGGAATGGAGGTTTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGACAGCGTTATTGCATTTATTAATAACTTAGAAA
AAGTTCCGTTACAGCCCTTAACCACTGGCGCTATCTCAGTTCCTTATGATGCACTAAACCCTAAAAATTTACAGGAATAT
GGTTACTTACGGGCTTTAGAGCCAAACCCAGCTAACACCTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTTGAAGCTAACACTGGTGGGTTGGTTTACAACGCAACTGGTGCTTTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTAATTATAATGATGGAGGTAACGTCTTTTTAGGTGGTTCATATGCGAAAGTTCCT
GTACCAATTGTGGGACAAAATGAAACACGTGATGAAGATGGAAATATCATAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTTGCATCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAGAATCCCTGCTGCTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCGACTGGACAAGATATTTTAAAAGCTTTCCCAATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
TTCAACTGATATTAGCGCTACGACTTTACCTTCCTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCATTCTTTACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGCGGTTTGCATATTGTGGATGCCTCAACTGGTATAGAACAAATGGCTTTCGTTCCTGC
CGATATTTTAAATGATCCAGTCGCTTCAAAAGCTTTAGTTGTTGGTCAAAGTGATGCTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACGGGAAGTGGTAGCTCCGCAGTATCAAAAGTGACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTCCTCTTTAGAGTAGGTGCAGACCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGGATGATTAAACGGGTCATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAACTCTTGCTTTACGAATGGAAAAGCAAAAGGAAACGCTGTCTATATTATTGATGCTAAAACTGGGGAACG
CTTATGGTGGACTAGTGATACAGGCTCTAGTGTAGATAACTCTAATATGAAGCACAGTATTGTGAGTCGTATTAGTACCT
TAGATCGAGATGCTGATGGTTTAGTAGACCATTTATATTTTGGCGATTTAGGTGGACAAGTTTTCCGTATCGATCTTAAT
AATAACCAGACCAAAACAAATTCGACTTATAGCAGTTTCGGGGTTCGAGTTGTTCGATTAGCCAATTTGGCAACGAATGA
TGCTACTTATGATAGCTCGAACGACTATACAGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTAGGTATTGCGTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCAAGCACAGCATTAAGCGGAAGACCTGTAAACAACATCTATGGAATTATCGACAAAGATTT
TATTAAAAAGAATTTAATGTCTTTAACGGATAGCGAGCTTGAAACGAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGATCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACTCTGGGACGGGACAAAATGGTTGGTAT
CGTTCACTTTCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTCAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCTCGGGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGATCA
ATTGATCAGAATAAAGAGAATGGAAGTGGATTCAGAACAAAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TACAAATATCATTGGCTCAGGTATTCGTGGCATAGCATTCGTTCCAAAAAGAGATGTACCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

83.876

100

0.843