Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HLV59_RS01665 Genome accession   NZ_CP053391
Coordinates   354481..354963 (+) Length   160 a.a.
NCBI ID   WP_171429209.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349481..359963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01655 pilX 349795..350604 (+) 810 WP_171429205.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HLV59_RS01660 pilY1 350616..354470 (+) 3855 WP_171429206.1 PilC/PilY family type IV pilus protein Machinery gene
  HLV59_RS01665 pilY2 354481..354963 (+) 483 WP_171429209.1 type IV pilin protein Machinery gene
  HLV59_RS01670 pilE 354960..355385 (+) 426 WP_171429211.1 type IV pilin protein Machinery gene
  HLV59_RS01675 rpsP 355533..355784 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HLV59_RS01680 rimM 355804..356352 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  HLV59_RS01685 trmD 356395..357150 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HLV59_RS01690 rplS 357370..357738 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  HLV59_RS01695 - 357790..358731 (-) 942 WP_171430564.1 triacylglycerol lipase -
  HLV59_RS01700 - 358847..359878 (-) 1032 WP_171429213.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17441.70 Da        Isoelectric Point: 8.4721

>NTDB_id=444681 HLV59_RS01665 WP_171429209.1 354481..354963(+) (pilY2) [Acinetobacter lactucae isolate QL-1]
MNKYYILRFNQGVTLIELMVVIVIVAISASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNINFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=444681 HLV59_RS01665 WP_171429209.1 354481..354963(+) (pilY2) [Acinetobacter lactucae isolate QL-1]
ATGAATAAATACTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTCTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACCGCCTCTGCTGCCAAAGGCGAAATTCTAA
AATTGGCGGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACATTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.698

100

0.438