Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HLV59_RS01640 Genome accession   NZ_CP053391
Coordinates   347770..348243 (+) Length   157 a.a.
NCBI ID   WP_031949497.1    Uniprot ID   A0AB35K2Z3
Organism   Acinetobacter lactucae isolate QL-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342770..353243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS01615 - 343231..345336 (-) 2106 WP_057105808.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HLV59_RS01620 - 345352..345507 (-) 156 WP_014207816.1 hypothetical protein -
  HLV59_RS01625 rpoZ 345546..345824 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  HLV59_RS01630 gmk 345897..346526 (-) 630 WP_125698033.1 guanylate kinase -
  HLV59_RS01635 ispH 346649..347599 (+) 951 WP_016143645.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLV59_RS01640 fimU 347770..348243 (+) 474 WP_031949497.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLV59_RS01645 pilV 348237..348797 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  HLV59_RS01650 pilW 348797..349798 (+) 1002 WP_171429203.1 PilW family protein Machinery gene
  HLV59_RS01655 pilX 349795..350604 (+) 810 WP_171429205.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16896.47 Da        Isoelectric Point: 8.5281

>NTDB_id=444676 HLV59_RS01640 WP_031949497.1 347770..348243(+) (fimU) [Acinetobacter lactucae isolate QL-1]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKTNKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=444676 HLV59_RS01640 WP_031949497.1 347770..348243(+) (fimU) [Acinetobacter lactucae isolate QL-1]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTAGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTGACTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.261

100

0.873