Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HLV59_RS00995 Genome accession   NZ_CP053391
Coordinates   223670..224257 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate QL-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218670..229257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLV59_RS00970 - 218736..219548 (-) 813 WP_171429127.1 SDR family oxidoreductase -
  HLV59_RS00975 - 219652..220023 (-) 372 WP_016143748.1 MerR family transcriptional regulator -
  HLV59_RS00980 tenA 220088..220762 (-) 675 WP_057106279.1 thiaminase II -
  HLV59_RS00985 - 221025..222107 (+) 1083 WP_031949587.1 DUF475 domain-containing protein -
  HLV59_RS00990 - 222254..223618 (+) 1365 WP_005078603.1 MFS transporter -
  HLV59_RS00995 ssb 223670..224257 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  HLV59_RS01000 - 224298..224621 (-) 324 WP_032057180.1 AzlD domain-containing protein -
  HLV59_RS01005 - 224618..225313 (-) 696 WP_171429129.1 AzlC family ABC transporter permease -
  HLV59_RS01010 - 225382..225930 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  HLV59_RS01015 - 226236..227678 (+) 1443 WP_171429131.1 amino acid permease -
  HLV59_RS01020 - 227744..229243 (-) 1500 WP_216606750.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=444669 HLV59_RS00995 WP_005066890.1 223670..224257(+) (ssb) [Acinetobacter lactucae isolate QL-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=444669 HLV59_RS00995 WP_005066890.1 223670..224257(+) (ssb) [Acinetobacter lactucae isolate QL-1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATCCGTGGCGATCAGATGCAGAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AGGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAGTGGTGGTTATGGTAACCAAGGT
GGTTTCGGCAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385