Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNO53_RS18505 Genome accession   NZ_CP053383
Coordinates   3995668..3996288 (-) Length   206 a.a.
NCBI ID   WP_209474183.1    Uniprot ID   -
Organism   Halomonas sulfidivorans strain MCCC 1A13718     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3990668..4001288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO53_RS18485 (HNO53_18490) fabA 3992170..3992685 (+) 516 WP_209474175.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  HNO53_RS18490 (HNO53_18495) fabB 3992700..3993917 (+) 1218 WP_209474177.1 beta-ketoacyl-ACP synthase I -
  HNO53_RS18495 (HNO53_18500) - 3993986..3994744 (-) 759 WP_209474179.1 lysophospholipid acyltransferase family protein -
  HNO53_RS18500 (HNO53_18505) - 3994741..3995634 (-) 894 WP_209474181.1 sugar nucleotide-binding protein -
  HNO53_RS18505 (HNO53_18510) ssb 3995668..3996288 (-) 621 WP_209474183.1 single-stranded DNA-binding protein Machinery gene
  HNO53_RS18510 (HNO53_18515) - 3996361..3997746 (-) 1386 WP_209474185.1 MFS transporter -
  HNO53_RS18515 (HNO53_18520) uvrA 3997910..4000771 (+) 2862 WP_209474187.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22207.32 Da        Isoelectric Point: 5.2421

>NTDB_id=444662 HNO53_RS18505 WP_209474183.1 3995668..3996288(-) (ssb) [Halomonas sulfidivorans strain MCCC 1A13718]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQRQERTEWHSVVLFNRLAEIAQQYLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVCNDMQMLDSRSGDFGGQAGAGMPQQQSGGYGAPQGAPMAQQQGGYGAPPQGGYGNAPQ
QGGYGGGQPQQRPAPGGQPQQGGQKQNNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=444662 HNO53_RS18505 WP_209474183.1 3995668..3996288(-) (ssb) [Halomonas sulfidivorans strain MCCC 1A13718]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGTAACCTGGGGCAGGACCCCGAGGTCCGTTTCATGCCTTCCGGTAG
TCCCGTTGCCAATCTGCGCGTCGCGACGACCGATACCTGGACCGACAAGCAGAGCGGTCAACGTCAGGAGCGTACCGAGT
GGCACTCGGTGGTACTGTTCAACCGCTTGGCCGAGATTGCCCAGCAGTACCTTAAGAAAGGCTCGCGGGTCTACCTCGAG
GGGCGCCTGCAGACGCGTAAATGGCAGGGGCAGGACGGTCAGGACCGCTACACCACTGAGATCGTCTGTAACGACATGCA
GATGCTCGATTCGCGTAGTGGCGACTTTGGCGGCCAGGCCGGGGCGGGCATGCCGCAGCAGCAAAGCGGTGGCTACGGTG
CGCCTCAGGGTGCGCCCATGGCACAGCAGCAGGGCGGTTATGGCGCTCCGCCGCAGGGGGGCTACGGTAACGCGCCGCAG
CAGGGCGGCTATGGCGGTGGCCAGCCGCAGCAGCGTCCGGCGCCGGGCGGCCAGCCTCAGCAGGGCGGCCAGAAGCAGAA
CAACTACGGTGCGCCCGATCCGGGCAGCTTCGACGATTTCGACGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.51
  ssb Glaesserella parasuis strain SC1401

49.048

100

0.5
  ssb Neisseria gonorrhoeae MS11

44.608

99.029

0.442
  ssb Neisseria meningitidis MC58

43.204

100

0.432