Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNO52_RS18240 Genome accession   NZ_CP053382
Coordinates   3944449..3945075 (-) Length   208 a.a.
NCBI ID   WP_197566631.1    Uniprot ID   A0A7M1QDL3
Organism   Halomonas sp. MCCC 1A13316     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3933075..3944226 3944449..3945075 flank 223


Gene organization within MGE regions


Location: 3933075..3945075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO52_RS18200 (HNO52_18195) - 3933254..3934231 (+) 978 WP_197566623.1 DNA-processing protein DprA -
  HNO52_RS18205 (HNO52_18200) - 3934224..3935450 (+) 1227 WP_197566624.1 phosphoribosyl transferase -
  HNO52_RS18210 (HNO52_18205) - 3935591..3936109 (+) 519 WP_197566625.1 hypothetical protein -
  HNO52_RS18215 (HNO52_18210) - 3936543..3938645 (-) 2103 WP_197566626.1 DUF262 and DUF1524 domain-containing protein -
  HNO52_RS18220 (HNO52_18215) - 3938993..3939460 (-) 468 WP_197566627.1 hypothetical protein -
  HNO52_RS18225 (HNO52_18220) - 3939457..3941460 (-) 2004 WP_197566628.1 hypothetical protein -
  HNO52_RS18230 (HNO52_18225) - 3941444..3943039 (-) 1596 WP_197566629.1 site-specific integrase -
  HNO52_RS18235 (HNO52_18230) - 3943039..3944226 (-) 1188 WP_197566630.1 site-specific integrase -
  HNO52_RS18240 (HNO52_18235) ssb 3944449..3945075 (-) 627 WP_197566631.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22383.48 Da        Isoelectric Point: 5.2421

>NTDB_id=444640 HNO52_RS18240 WP_197566631.1 3944449..3945075(-) (ssb) [Halomonas sp. MCCC 1A13316]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQRQERTEWHSVVLFNRLAEIAQQYLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVCNDMQMLDTRSGDFGGQQPGASMPQQQQGGYGNAPAQGGQPQQGGYGAPAQGGGFGNA
PQQGGFGGGQPPQRPAPGGQPQQGGQKQNNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 627 bp        

>NTDB_id=444640 HNO52_RS18240 WP_197566631.1 3944449..3945075(-) (ssb) [Halomonas sp. MCCC 1A13316]
ATGGCCCGTGGCGTCAACAAGGTCATACTCATCGGCAACCTGGGGCAGGATCCCGAGGTTCGCTTCATGCCGTCCGGTAG
CCCCGTCGCCAACCTGCGCGTCGCCACTACCGATACCTGGACCGACAAGCAAAGCGGCCAGCGCCAGGAGCGGACCGAGT
GGCACTCGGTGGTATTGTTCAACCGCCTGGCCGAGATTGCCCAGCAGTACCTGAAGAAGGGGTCGAGGGTCTATCTGGAA
GGGCGTCTGCAGACACGCAAGTGGCAGGGGCAGGACGGGCAGGATCGCTATACCACCGAGATCGTGTGCAACGACATGCA
GATGCTCGATACCCGCAGCGGTGACTTCGGCGGTCAGCAACCGGGGGCGAGCATGCCGCAGCAACAGCAGGGCGGCTACG
GCAACGCTCCCGCACAGGGCGGCCAGCCGCAGCAGGGTGGTTACGGTGCTCCAGCGCAAGGTGGCGGCTTTGGCAACGCG
CCCCAGCAGGGTGGCTTTGGCGGCGGGCAGCCCCCGCAGCGCCCGGCGCCGGGCGGCCAGCCCCAGCAGGGCGGCCAGAA
GCAGAACAACTACGGCGCGCCCGATCCGGGCAGCTTCGACGATTTCGATGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1QDL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.585

100

0.495
  ssb Vibrio cholerae strain A1552

48.585

100

0.495
  ssb Neisseria meningitidis MC58

42.995

99.519

0.428
  ssb Neisseria gonorrhoeae MS11

42.995

99.519

0.428