Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNO51_RS18200 Genome accession   NZ_CP053381
Coordinates   3943762..3944388 (-) Length   208 a.a.
NCBI ID   WP_197448625.1    Uniprot ID   -
Organism   Billgrantia sulfidoxydans strain MCCC 1A11059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3938762..3949388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO51_RS18180 (HNO51_18160) fabA 3940261..3940776 (+) 516 WP_197448621.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  HNO51_RS18185 (HNO51_18165) fabB 3940791..3942008 (+) 1218 WP_197448622.1 beta-ketoacyl-ACP synthase I -
  HNO51_RS18190 (HNO51_18170) - 3942080..3942838 (-) 759 WP_197448623.1 lysophospholipid acyltransferase family protein -
  HNO51_RS18195 (HNO51_18175) - 3942835..3943728 (-) 894 WP_197448624.1 sugar nucleotide-binding protein -
  HNO51_RS18200 (HNO51_18180) ssb 3943762..3944388 (-) 627 WP_197448625.1 single-stranded DNA-binding protein Machinery gene
  HNO51_RS18205 (HNO51_18185) - 3944460..3945845 (-) 1386 WP_209538044.1 MFS transporter -
  HNO51_RS18210 (HNO51_18190) uvrA 3946009..3948870 (+) 2862 WP_197448627.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22204.26 Da        Isoelectric Point: 5.2421

>NTDB_id=444619 HNO51_RS18200 WP_197448625.1 3943762..3944388(-) (ssb) [Billgrantia sulfidoxydans strain MCCC 1A11059]
MARGVNKVILIGNLGQDPEVRFMPSGSPVANLRVATTDTWTDKQSGQRQERTEWHSVVLFNRLAEIAQQYLKKGSRVYLE
GRLQTRKWQGQDGQDRYTTEIVCNDMQMLDSRSGDFGGQAGAGMPQQQGGGYGAPQGAPVPQQGGYGAPPQGGGGYGNAS
QQGGGGYGGQPQQRPAPGGQPQQGGQKQNNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 627 bp        

>NTDB_id=444619 HNO51_RS18200 WP_197448625.1 3943762..3944388(-) (ssb) [Billgrantia sulfidoxydans strain MCCC 1A11059]
ATGGCCCGTGGCGTCAACAAGGTCATTCTCATCGGTAACCTGGGGCAGGACCCCGAGGTCCGCTTCATGCCATCCGGCAG
CCCCGTCGCCAACCTGCGCGTGGCAACCACCGACACCTGGACCGACAAGCAGAGCGGCCAGCGTCAGGAGCGCACCGAGT
GGCACTCGGTGGTACTGTTCAACCGCCTGGCCGAGATCGCCCAGCAGTATTTGAAGAAAGGGTCTCGGGTCTACCTCGAA
GGGCGCCTGCAGACGCGCAAGTGGCAGGGGCAGGACGGTCAGGATCGCTACACCACCGAGATCGTCTGCAATGACATGCA
GATGCTCGATTCGCGTAGCGGCGACTTCGGTGGCCAGGCCGGGGCGGGCATGCCGCAGCAGCAGGGTGGAGGCTACGGCG
CACCGCAAGGCGCCCCCGTGCCGCAGCAGGGCGGCTACGGCGCTCCGCCGCAAGGTGGTGGTGGCTACGGCAACGCCTCC
CAGCAGGGTGGCGGCGGCTATGGCGGCCAGCCTCAGCAGCGCCCGGCGCCGGGCGGACAGCCCCAGCAGGGCGGGCAGAA
GCAGAACAACTACGGTGCACCCGACCCGGGTAGCTTCGACGATTTCGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.296

100

0.505
  ssb Glaesserella parasuis strain SC1401

47.642

100

0.486
  ssb Neisseria gonorrhoeae MS11

42.512

99.519

0.423
  ssb Neisseria meningitidis MC58

42.718

99.038

0.423