Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HND96_RS16605 Genome accession   NZ_CP053371
Coordinates   3577684..3578211 (+) Length   175 a.a.
NCBI ID   WP_075673066.1    Uniprot ID   A0A6G6SAY5
Organism   Proteus terrae subsp. cibarius strain G32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3572684..3583211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HND96_RS16600 (HND96_16645) uvrA 3574597..3577431 (-) 2835 WP_171455348.1 excinuclease ABC subunit UvrA -
  HND96_RS16605 (HND96_16650) ssb 3577684..3578211 (+) 528 WP_075673066.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HND96_RS16610 (HND96_16655) zur 3578490..3579020 (+) 531 WP_006536370.1 zinc uptake transcriptional repressor Zur -
  HND96_RS16615 (HND96_16660) - 3579054..3579359 (-) 306 Protein_3226 type II toxin-antitoxin system RelE/ParE family toxin -
  HND96_RS16620 (HND96_16665) - 3579349..3579603 (-) 255 WP_075673067.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  HND96_RS16625 (HND96_16670) lexA 3579764..3580375 (-) 612 WP_023583074.1 transcriptional repressor LexA -
  HND96_RS16630 (HND96_16675) - 3580503..3580874 (-) 372 WP_006536373.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18931.97 Da        Isoelectric Point: 4.9468

>NTDB_id=444411 HND96_RS16605 WP_075673066.1 3577684..3578211(+) (ssb) [Proteus terrae subsp. cibarius strain G32]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGNQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=444411 HND96_RS16605 WP_075673066.1 3577684..3578211(+) (ssb) [Proteus terrae subsp. cibarius strain G32]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAATCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAGTTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTTGTTAACATTGG
CGGCTCAATGCAAATGTTAGGCGGCCGTGGTAACCAAGATGGCGCACCTTCTCAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCACAATCTCGCCCAGCACAACAACCAGCTGCCGCACCAGCG
CCAAACAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6SAY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.514

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

49.162

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.503