Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ITG71_RS27635 Genome accession   NZ_CP064403
Coordinates   5960334..5960858 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain WTJH12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5955334..5965858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG71_RS27620 (ITG71_27605) aroB 5956450..5957556 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  ITG71_RS27625 (ITG71_27610) aroK 5957606..5958124 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ITG71_RS27630 (ITG71_27615) pilQ 5958136..5960280 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  ITG71_RS27635 (ITG71_27620) comL/pilP 5960334..5960858 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ITG71_RS27640 (ITG71_27625) pilO 5960855..5961478 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ITG71_RS27645 (ITG71_27630) pilN 5961475..5962071 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ITG71_RS27650 (ITG71_27635) pilM 5962071..5963135 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ITG71_RS27655 (ITG71_27640) - 5963320..5965791 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=444410 ITG71_RS27635 WP_003095836.1 5960334..5960858(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH12]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=444410 ITG71_RS27635 WP_003095836.1 5960334..5960858(-) (comL/pilP) [Pseudomonas aeruginosa strain WTJH12]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362