Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HA034_RS01010 | Genome accession | NZ_CP053356 |
| Coordinates | 170887..171357 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain 14507 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 146815..200338 | 170887..171357 | within | 0 |
Gene organization within MGE regions
Location: 146815..200338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA034_RS00855 (HA034_00860) | - | 146815..147441 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| HA034_RS00860 (HA034_00865) | - | 147638..148897 (+) | 1260 | WP_000120297.1 | SdrH family protein | - |
| HA034_RS00865 (HA034_00870) | mroQ | 148922..149665 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| HA034_RS00870 (HA034_00875) | groES | 149840..150124 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| HA034_RS00875 (HA034_00880) | groL | 150200..151816 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| HA034_RS00880 (HA034_00885) | - | 152356..153663 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HA034_RS00885 (HA034_00890) | - | 154107..155330 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| HA034_RS00890 (HA034_00895) | lukH | 155766..156821 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| HA034_RS00895 (HA034_00900) | lukG | 156843..157859 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| HA034_RS00900 (HA034_00905) | sph | 158097..158927 (-) | 831 | Protein_144 | sphingomyelin phosphodiesterase | - |
| HA034_RS00905 (HA034_00910) | - | 158978..160015 (-) | 1038 | WP_000857200.1 | site-specific integrase | - |
| HA034_RS00910 (HA034_00915) | - | 160206..160921 (-) | 716 | Protein_146 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| HA034_RS00915 (HA034_00920) | - | 161000..161182 (-) | 183 | WP_000705245.1 | hypothetical protein | - |
| HA034_RS00920 (HA034_00925) | - | 161253..161438 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| HA034_RS00925 (HA034_00930) | - | 161435..161581 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| HA034_RS00930 (HA034_00935) | - | 161655..162509 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| HA034_RS00935 (HA034_00940) | - | 162521..163237 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| HA034_RS00940 (HA034_00945) | - | 163401..163643 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| HA034_RS00945 (HA034_00950) | - | 163656..164099 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| HA034_RS14580 | - | 164114..164255 (+) | 142 | Protein_154 | hypothetical protein | - |
| HA034_RS00950 (HA034_00955) | - | 164248..164457 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| HA034_RS00955 (HA034_00960) | - | 164514..165263 (+) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| HA034_RS00960 (HA034_00965) | - | 165279..165476 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| HA034_RS00965 (HA034_00970) | - | 165463..165843 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| HA034_RS00970 (HA034_00975) | - | 165898..166221 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| HA034_RS00975 (HA034_00980) | - | 166218..166379 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| HA034_RS00980 (HA034_00985) | - | 166474..166777 (+) | 304 | Protein_161 | DUF2482 family protein | - |
| HA034_RS00985 (HA034_00990) | - | 166782..167042 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| HA034_RS00990 (HA034_00995) | - | 167051..167314 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HA034_RS00995 (HA034_01000) | - | 167323..169266 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| HA034_RS01000 (HA034_01005) | - | 169268..170188 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| HA034_RS01005 (HA034_01010) | - | 170269..170886 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| HA034_RS01010 (HA034_01015) | ssbA | 170887..171357 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| HA034_RS01015 (HA034_01020) | - | 171387..172280 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| HA034_RS01020 (HA034_01025) | - | 172287..172505 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| HA034_RS01025 (HA034_01030) | - | 172514..172918 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HA034_RS01030 (HA034_01035) | - | 172931..173302 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| HA034_RS01035 (HA034_01040) | - | 173302..173559 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| HA034_RS01040 (HA034_01045) | - | 173556..173804 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| HA034_RS01045 (HA034_01050) | - | 173819..174064 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| HA034_RS01050 (HA034_01055) | - | 174061..174597 (+) | 537 | WP_000185693.1 | dUTPase | - |
| HA034_RS01055 (HA034_01060) | - | 174634..174879 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| HA034_RS01060 (HA034_01065) | - | 174876..175082 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| HA034_RS01065 (HA034_01070) | - | 175079..175228 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HA034_RS01070 (HA034_01075) | - | 175228..175428 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| HA034_RS01075 (HA034_01080) | - | 175456..175872 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| HA034_RS01080 (HA034_01085) | - | 176104..176403 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
| HA034_RS01085 (HA034_01090) | - | 176534..176878 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| HA034_RS01090 (HA034_01095) | - | 176875..178536 (+) | 1662 | WP_000625096.1 | terminase large subunit | - |
| HA034_RS01095 (HA034_01100) | - | 178552..179715 (+) | 1164 | WP_000025268.1 | phage portal protein | - |
| HA034_RS01100 (HA034_01105) | - | 179699..180436 (+) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| HA034_RS01105 (HA034_01110) | - | 180459..181604 (+) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| HA034_RS01110 (HA034_01115) | - | 181624..181908 (+) | 285 | WP_000238241.1 | hypothetical protein | - |
| HA034_RS01115 (HA034_01120) | - | 181898..182182 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| HA034_RS01120 (HA034_01125) | - | 182166..182528 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| HA034_RS01125 (HA034_01130) | - | 182525..182929 (+) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| HA034_RS01130 (HA034_01135) | - | 182926..183333 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| HA034_RS01135 (HA034_01140) | - | 183334..183978 (+) | 645 | WP_000985142.1 | major tail protein | - |
| HA034_RS01140 (HA034_01145) | - | 184014..184244 (+) | 231 | Protein_193 | Ig-like domain-containing protein | - |
| HA034_RS01145 (HA034_01150) | - | 184294..184644 (+) | 351 | WP_001096355.1 | hypothetical protein | - |
| HA034_RS01150 | - | 184695..184832 (+) | 138 | WP_001549167.1 | hypothetical protein | - |
| HA034_RS01155 (HA034_01155) | - | 184889..189421 (+) | 4533 | WP_001557459.1 | phage tail tape measure protein | - |
| HA034_RS01160 (HA034_01160) | - | 189418..190902 (+) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| HA034_RS01165 (HA034_01165) | - | 190918..194703 (+) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| HA034_RS01170 (HA034_01170) | - | 194693..194845 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| HA034_RS01175 (HA034_01175) | - | 194892..195179 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| HA034_RS01180 (HA034_01180) | - | 195237..195533 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| HA034_RS01185 (HA034_01185) | pepG1 | 195725..195859 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| HA034_RS01190 (HA034_01190) | - | 195912..196019 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| HA034_RS01195 (HA034_01195) | - | 196071..196325 (+) | 255 | WP_000611512.1 | phage holin | - |
| HA034_RS01200 (HA034_01200) | - | 196337..197092 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| HA034_RS01205 (HA034_01205) | sak | 197283..197774 (+) | 492 | WP_000919350.1 | staphylokinase | - |
| HA034_RS01210 (HA034_01210) | - | 198424..198759 (+) | 336 | Protein_207 | SH3 domain-containing protein | - |
| HA034_RS01215 (HA034_01215) | - | 198854..199303 (-) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| HA034_RS01220 (HA034_01220) | scn | 199988..200338 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=444271 HA034_RS01010 WP_000934759.1 170887..171357(+) (ssbA) [Staphylococcus aureus strain 14507]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=444271 HA034_RS01010 WP_000934759.1 170887..171357(+) (ssbA) [Staphylococcus aureus strain 14507]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |