Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HA035_RS14100 | Genome accession | NZ_CP053353 |
| Coordinates | 2803314..2803784 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 16405 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2772715..2828864 | 2803314..2803784 | within | 0 |
Gene organization within MGE regions
Location: 2772715..2828864
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA035_RS13885 (HA035_13885) | scn | 2772715..2773065 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| HA035_RS13890 (HA035_13890) | - | 2773576..2773911 (-) | 336 | Protein_2702 | SH3 domain-containing protein | - |
| HA035_RS13895 (HA035_13895) | sak | 2774562..2775053 (-) | 492 | WP_000920038.1 | staphylokinase | - |
| HA035_RS13900 (HA035_13900) | - | 2775244..2775999 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| HA035_RS13905 (HA035_13905) | - | 2776011..2776265 (-) | 255 | WP_000611512.1 | phage holin | - |
| HA035_RS13910 (HA035_13910) | - | 2776317..2776424 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| HA035_RS13915 (HA035_13915) | pepG1 | 2776477..2776611 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| HA035_RS13920 (HA035_13920) | sea | 2776762..2777535 (-) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| HA035_RS13925 (HA035_13925) | - | 2777908..2778282 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| HA035_RS13930 (HA035_13930) | - | 2778338..2778625 (-) | 288 | WP_001262621.1 | hypothetical protein | - |
| HA035_RS13935 (HA035_13935) | - | 2778671..2778823 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| HA035_RS13940 (HA035_13940) | - | 2778816..2782598 (-) | 3783 | WP_031836433.1 | phage tail spike protein | - |
| HA035_RS13945 (HA035_13945) | - | 2782614..2784098 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| HA035_RS13950 (HA035_13950) | - | 2784095..2788624 (-) | 4530 | WP_031836434.1 | phage tail tape measure protein | - |
| HA035_RS13955 | - | 2788681..2788818 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| HA035_RS13960 (HA035_13955) | - | 2788869..2789219 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| HA035_RS13965 (HA035_13960) | - | 2789269..2789499 (-) | 231 | Protein_2717 | Ig-like domain-containing protein | - |
| HA035_RS13970 (HA035_13965) | - | 2789535..2790179 (-) | 645 | WP_000268741.1 | major tail protein | - |
| HA035_RS13975 (HA035_13970) | - | 2790180..2790587 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| HA035_RS13980 (HA035_13975) | - | 2790584..2790988 (-) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| HA035_RS13985 (HA035_13980) | - | 2790985..2791347 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| HA035_RS13990 (HA035_13985) | - | 2791331..2791615 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| HA035_RS13995 (HA035_13990) | - | 2791605..2791889 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| HA035_RS14000 (HA035_13995) | - | 2791909..2793054 (-) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| HA035_RS14005 (HA035_14000) | - | 2793078..2793815 (-) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| HA035_RS14010 (HA035_14005) | - | 2793799..2794986 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| HA035_RS14015 (HA035_14010) | - | 2795002..2796663 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| HA035_RS14020 (HA035_14015) | - | 2796660..2797004 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| HA035_RS14025 (HA035_14020) | - | 2797134..2797433 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| HA035_RS14030 (HA035_14025) | - | 2797665..2798081 (-) | 417 | WP_000590126.1 | hypothetical protein | - |
| HA035_RS14035 (HA035_14030) | - | 2798109..2798309 (-) | 201 | WP_000265039.1 | DUF1514 family protein | - |
| HA035_RS14040 (HA035_14035) | - | 2798309..2798458 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HA035_RS14045 (HA035_14040) | - | 2798455..2798661 (-) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| HA035_RS14050 (HA035_14045) | - | 2798698..2799234 (-) | 537 | WP_001066444.1 | dUTPase | - |
| HA035_RS14055 | - | 2799590..2799715 (-) | 126 | Protein_2735 | DUF1024 family protein | - |
| HA035_RS14060 (HA035_14055) | - | 2799708..2800118 (-) | 411 | WP_000197968.1 | hypothetical protein | - |
| HA035_RS14065 (HA035_14060) | - | 2800115..2800624 (-) | 510 | WP_001105598.1 | hypothetical protein | - |
| HA035_RS14070 (HA035_14065) | - | 2800621..2801070 (-) | 450 | WP_000982711.1 | YopX family protein | - |
| HA035_RS14075 (HA035_14070) | - | 2801135..2801377 (-) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| HA035_RS14080 (HA035_14075) | - | 2801381..2801749 (-) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| HA035_RS14085 (HA035_14080) | - | 2801762..2802166 (-) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HA035_RS14090 (HA035_14085) | - | 2802175..2802393 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| HA035_RS14095 (HA035_14090) | - | 2802400..2803284 (-) | 885 | WP_000148301.1 | DnaD domain protein | - |
| HA035_RS14100 (HA035_14095) | ssbA | 2803314..2803784 (-) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| HA035_RS14105 (HA035_14100) | - | 2803785..2804402 (-) | 618 | WP_235686151.1 | MBL fold metallo-hydrolase | - |
| HA035_RS14110 (HA035_14105) | - | 2804483..2805403 (-) | 921 | WP_000138481.1 | recombinase RecT | - |
| HA035_RS14115 (HA035_14110) | - | 2805405..2807348 (-) | 1944 | WP_000700565.1 | AAA family ATPase | - |
| HA035_RS14120 (HA035_14115) | - | 2807357..2807620 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| HA035_RS14125 (HA035_14120) | - | 2807629..2807889 (-) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| HA035_RS14130 (HA035_14125) | - | 2807982..2808143 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| HA035_RS14135 (HA035_14130) | - | 2808140..2808460 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| HA035_RS14140 (HA035_14135) | - | 2808519..2809151 (+) | 633 | WP_000275058.1 | hypothetical protein | - |
| HA035_RS14145 (HA035_14140) | - | 2809166..2809306 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| HA035_RS14150 (HA035_14145) | - | 2809337..2809534 (-) | 198 | WP_001148861.1 | hypothetical protein | - |
| HA035_RS14155 (HA035_14150) | - | 2809550..2810299 (-) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| HA035_RS14160 (HA035_14155) | - | 2810356..2810895 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| HA035_RS14165 (HA035_14160) | - | 2810919..2811179 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| HA035_RS14170 (HA035_14165) | - | 2811197..2811421 (-) | 225 | WP_000338186.1 | DUF739 family protein | - |
| HA035_RS14175 (HA035_14170) | - | 2811580..2812350 (+) | 771 | WP_031783378.1 | S24 family peptidase | - |
| HA035_RS14180 (HA035_14175) | - | 2812550..2812732 (+) | 183 | WP_000705240.1 | hypothetical protein | - |
| HA035_RS14185 (HA035_14180) | - | 2812768..2812914 (+) | 147 | WP_001013104.1 | hypothetical protein | - |
| HA035_RS14190 (HA035_14185) | - | 2812911..2813525 (-) | 615 | WP_000191459.1 | hypothetical protein | - |
| HA035_RS14195 (HA035_14190) | - | 2813633..2814670 (+) | 1038 | WP_000857176.1 | site-specific integrase | - |
| HA035_RS14200 (HA035_14195) | sph | 2814721..2815551 (+) | 831 | Protein_2764 | sphingomyelin phosphodiesterase | - |
| HA035_RS14205 (HA035_14200) | lukG | 2815789..2816805 (-) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| HA035_RS14210 (HA035_14205) | lukH | 2816827..2817882 (-) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| HA035_RS14215 (HA035_14210) | - | 2818317..2819540 (+) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| HA035_RS14220 (HA035_14215) | - | 2819912..2820757 (-) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| HA035_RS14225 (HA035_14220) | - | 2820819..2821730 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| HA035_RS14230 (HA035_14225) | - | 2821891..2823198 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| HA035_RS14235 (HA035_14230) | - | 2824051..2824494 (-) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| HA035_RS14240 (HA035_14235) | - | 2824600..2825036 (-) | 437 | Protein_2772 | hypothetical protein | - |
| HA035_RS14245 (HA035_14240) | - | 2825354..2825944 (-) | 591 | WP_031806879.1 | terminase small subunit | - |
| HA035_RS14250 (HA035_14245) | - | 2825941..2826153 (-) | 213 | WP_000128898.1 | hypothetical protein | - |
| HA035_RS14255 (HA035_14250) | - | 2826214..2826760 (+) | 547 | Protein_2775 | site-specific integrase | - |
| HA035_RS14260 (HA035_14255) | groL | 2826855..2828471 (-) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| HA035_RS14265 (HA035_14260) | groES | 2828580..2828864 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=444265 HA035_RS14100 WP_000934770.1 2803314..2803784(-) (ssbA) [Staphylococcus aureus strain 16405]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=444265 HA035_RS14100 WP_000934770.1 2803314..2803784(-) (ssbA) [Staphylococcus aureus strain 16405]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |