Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HL653_RS21655 Genome accession   NZ_CP053346
Coordinates   4775475..4776059 (+) Length   194 a.a.
NCBI ID   WP_171746329.1    Uniprot ID   -
Organism   Sphingomonas sp. AP4-R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4770475..4781059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL653_RS21630 (HL653_21655) - 4770749..4771276 (+) 528 WP_171747190.1 YdcF family protein -
  HL653_RS21635 (HL653_21660) - 4771401..4772327 (+) 927 WP_253717252.1 DMT family transporter -
  HL653_RS21640 (HL653_21665) - 4772324..4772995 (+) 672 WP_171746326.1 COQ9 family protein -
  HL653_RS21645 (HL653_21670) - 4773201..4773437 (+) 237 WP_171746327.1 FeoA family protein -
  HL653_RS21650 (HL653_21675) - 4773434..4775296 (+) 1863 WP_171746328.1 ferrous iron transporter B -
  HL653_RS21655 (HL653_21680) ssb 4775475..4776059 (+) 585 WP_171746329.1 single-stranded DNA-binding protein Machinery gene
  HL653_RS21660 (HL653_21685) - 4776116..4776649 (-) 534 WP_171746330.1 DUF177 domain-containing protein -
  HL653_RS21665 (HL653_21690) - 4776637..4777164 (-) 528 WP_253717254.1 ubiquinol-cytochrome C chaperone family protein -
  HL653_RS21670 (HL653_21695) - 4777286..4777771 (+) 486 WP_171746332.1 outer membrane protein assembly factor BamE -
  HL653_RS21675 (HL653_21700) - 4777959..4780223 (-) 2265 WP_171746333.1 NADP-dependent malic enzyme -
  HL653_RS21680 (HL653_21705) - 4780361..4780630 (+) 270 WP_253717256.1 hypothetical protein -
  HL653_RS21685 (HL653_21710) - 4780570..4780905 (+) 336 WP_171746334.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 19937.60 Da        Isoelectric Point: 5.0421

>NTDB_id=444175 HL653_RS21655 WP_171746329.1 4775475..4776059(+) (ssb) [Sphingomonas sp. AP4-R1]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVELRIATSETWKDRSSGERKEKTEWHTVKLFNEGLANTAERYLRKGSKVYI
EGQLQTRKWQDQSGADRYSTEIVLQGFNGTLVMLDGPQGGGQGGGGASRGGWNEDDGGDFGGGYGQGGASGGGSGFGGGA
AGGSFGGARGGGNAGGARPSPAPFDSDLDDDVPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=444175 HL653_RS21655 WP_171746329.1 4775475..4776059(+) (ssb) [Sphingomonas sp. AP4-R1]
ATGGCCGGATCGGTCAACAAGGTAATTCTGGTCGGCAATCTGGGCCGCGATCCCGAATCGCGCAGCTTCCAGAATGGCGG
CAAGGTCGTCGAACTGCGCATCGCCACGTCGGAGACGTGGAAGGATCGCAGCAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACACGGTGAAGCTCTTCAACGAGGGCCTCGCCAACACCGCCGAGCGCTATCTGCGCAAGGGCAGCAAGGTCTATATT
GAGGGCCAGCTCCAGACGCGGAAGTGGCAGGACCAGAGCGGCGCCGATCGCTATTCCACCGAGATCGTGCTGCAGGGCTT
CAACGGCACGCTCGTGATGCTCGACGGCCCGCAGGGCGGTGGCCAGGGTGGCGGCGGTGCCAGCCGCGGCGGCTGGAACG
AGGATGACGGCGGCGATTTCGGCGGCGGCTATGGTCAGGGTGGCGCAAGTGGCGGCGGAAGCGGCTTCGGCGGCGGCGCG
GCCGGCGGCAGCTTCGGCGGTGCGCGCGGCGGCGGAAACGCGGGCGGTGCACGCCCGAGCCCGGCCCCCTTCGACAGCGA
TCTGGACGACGACGTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.276

100

0.505
  ssb Vibrio cholerae strain A1552

48.947

97.938

0.479
  ssb Neisseria meningitidis MC58

38.974

100

0.392
  ssb Neisseria gonorrhoeae MS11

38.974

100

0.392