Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HLY12_RS20275 Genome accession   NZ_CP053259
Coordinates   4298371..4298907 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain GF3-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4293371..4303907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY12_RS20255 (HLY12_20265) soxR 4295100..4295564 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HLY12_RS20260 (HLY12_20270) soxS 4295650..4295973 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HLY12_RS20265 (HLY12_20275) pdeC 4295976..4297562 (-) 1587 Protein_4023 c-di-GMP phosphodiesterase PdeC -
  HLY12_RS20270 (HLY12_20280) yjcB 4297991..4298272 (+) 282 WP_001295689.1 YjcB family protein -
  HLY12_RS20275 (HLY12_20285) ssb 4298371..4298907 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HLY12_RS20280 (HLY12_20290) uvrA 4299162..4301984 (+) 2823 WP_171284506.1 excinuclease ABC subunit UvrA -
  HLY12_RS20285 (HLY12_20295) yjbR 4302019..4302375 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HLY12_RS20290 (HLY12_20300) yjbQ 4302379..4302795 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HLY12_RS20295 (HLY12_20305) aphA 4302906..4303619 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=443820 HLY12_RS20275 WP_000168305.1 4298371..4298907(-) (ssb) [Escherichia coli strain GF3-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=443820 HLY12_RS20275 WP_000168305.1 4298371..4298907(-) (ssb) [Escherichia coli strain GF3-3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489