Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HLY11_RS12200 Genome accession   NZ_CP053258
Coordinates   2606851..2607387 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain GF4-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2605605..2632277 2606851..2607387 within 0


Gene organization within MGE regions


Location: 2605605..2632277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY11_RS12190 (HLY11_12195) yjcB 2605605..2605886 (+) 282 WP_001295689.1 YjcB family protein -
  HLY11_RS12195 (HLY11_12200) - 2606158..2606739 (+) 582 WP_171459980.1 hypothetical protein -
  HLY11_RS12200 (HLY11_12205) ssb 2606851..2607387 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HLY11_RS12205 (HLY11_12210) uvrA 2607641..2610463 (+) 2823 WP_024229436.1 excinuclease ABC subunit UvrA -
  HLY11_RS12210 (HLY11_12215) yjbR 2610498..2610854 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HLY11_RS12215 (HLY11_12220) yjbQ 2610858..2611274 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HLY11_RS12220 (HLY11_12225) aphA 2611385..2612098 (-) 714 WP_001226928.1 acid phosphatase AphA -
  HLY11_RS22640 - 2612502..2612724 (+) 223 Protein_2428 hypothetical protein -
  HLY11_RS22645 - 2612754..2613005 (+) 252 WP_248699094.1 hypothetical protein -
  HLY11_RS12230 (HLY11_12235) tyrB 2613227..2614420 (-) 1194 WP_171459981.1 aromatic amino acid transaminase -
  HLY11_RS12235 (HLY11_12240) - 2614502..2615506 (-) 1005 WP_171459982.1 AAA family ATPase -
  HLY11_RS12240 (HLY11_12245) pnuC 2615503..2616060 (-) 558 WP_000122239.1 nicotinamide riboside transporter PnuC -
  HLY11_RS12245 (HLY11_12250) alr 2616083..2617162 (-) 1080 WP_001147328.1 alanine racemase -
  HLY11_RS12250 (HLY11_12255) dnaB 2617215..2618630 (-) 1416 WP_000918363.1 replicative DNA helicase -
  HLY11_RS12255 (HLY11_12260) qorA 2618713..2619696 (+) 984 WP_000235522.1 quinone oxidoreductase -
  HLY11_RS12260 (HLY11_12265) pspG 2619862..2620104 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  HLY11_RS12265 (HLY11_12270) dusA 2620238..2621275 (-) 1038 WP_171459983.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HLY11_RS12270 (HLY11_12275) - 2621637..2622659 (-) 1023 WP_171459984.1 DUF2713 family protein -
  HLY11_RS12275 (HLY11_12280) zur 2622977..2623492 (+) 516 WP_000416263.1 zinc uptake transcriptional repressor Zur -
  HLY11_RS12280 (HLY11_12285) yjbJ 2623534..2623743 (-) 210 WP_001030593.1 CsbD family protein -
  HLY11_RS12285 (HLY11_12290) dinF 2623859..2625184 (-) 1326 WP_171459985.1 MATE family efflux transporter DinF -
  HLY11_RS12290 (HLY11_12295) lexA 2625257..2625865 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  HLY11_RS12295 (HLY11_12300) dgkA 2625975..2626343 (-) 369 WP_000002909.1 diacylglycerol kinase -
  HLY11_RS12300 (HLY11_12305) plsB 2626514..2628937 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HLY11_RS12305 (HLY11_12310) ubiA 2629092..2629964 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  HLY11_RS12310 (HLY11_12315) ubiC 2629977..2630474 (-) 498 WP_001308201.1 chorismate lyase -
  HLY11_RS12315 (HLY11_12320) - 2630697..2632277 (-) 1581 WP_171459986.1 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=443787 HLY11_RS12200 WP_000168305.1 2606851..2607387(-) (ssb) [Escherichia coli strain GF4-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=443787 HLY11_RS12200 WP_000168305.1 2606851..2607387(-) (ssb) [Escherichia coli strain GF4-3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489