Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHJ42_RS01000 Genome accession   NZ_CP053251
Coordinates   221478..222014 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SCU-204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 216478..227014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ42_RS00980 (HHJ42_04400) aphA 216592..217305 (+) 714 WP_001226933.1 acid phosphatase AphA -
  HHJ42_RS00985 (HHJ42_04405) yjbQ 217416..217832 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HHJ42_RS00990 (HHJ42_04410) yjbR 217836..218192 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HHJ42_RS00995 (HHJ42_04415) uvrA 218401..221223 (-) 2823 WP_001774120.1 excinuclease ABC subunit UvrA -
  HHJ42_RS01000 (HHJ42_04420) ssb 221478..222014 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HHJ42_RS01005 (HHJ42_04425) yjcB 222113..222394 (-) 282 WP_001296643.1 YjcB family protein -
  HHJ42_RS01010 (HHJ42_04430) pdeC 222823..224376 (+) 1554 WP_001540433.1 c-di-GMP phosphodiesterase PdeC -
  HHJ42_RS01015 (HHJ42_04435) soxS 224412..224735 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HHJ42_RS01020 (HHJ42_04440) soxR 224821..225285 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=443736 HHJ42_RS01000 WP_000168305.1 221478..222014(+) (ssb) [Escherichia coli strain SCU-204]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=443736 HHJ42_RS01000 WP_000168305.1 221478..222014(+) (ssb) [Escherichia coli strain SCU-204]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489