Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHJ54_RS10445 Genome accession   NZ_CP053245
Coordinates   2243723..2244259 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SCU-485     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2238723..2249259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ54_RS10425 (HHJ54_10425) aphA 2239011..2239724 (+) 714 WP_001226933.1 acid phosphatase AphA -
  HHJ54_RS10430 (HHJ54_10430) yjbQ 2239835..2240251 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HHJ54_RS10435 (HHJ54_10435) yjbR 2240255..2240611 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HHJ54_RS10440 (HHJ54_10440) uvrA 2240646..2243468 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  HHJ54_RS10445 (HHJ54_10445) ssb 2243723..2244259 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HHJ54_RS10450 (HHJ54_10450) yjcB 2244358..2244639 (-) 282 WP_001296643.1 YjcB family protein -
  HHJ54_RS10455 (HHJ54_10455) pdeC 2245068..2246621 (+) 1554 WP_001337743.1 c-di-GMP phosphodiesterase PdeC -
  HHJ54_RS10460 (HHJ54_10460) soxS 2246657..2246980 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HHJ54_RS10465 (HHJ54_10465) soxR 2247066..2247530 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=443707 HHJ54_RS10445 WP_000168305.1 2243723..2244259(+) (ssb) [Escherichia coli strain SCU-485]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=443707 HHJ54_RS10445 WP_000168305.1 2243723..2244259(+) (ssb) [Escherichia coli strain SCU-485]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489