Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HHJ44_RS13385 Genome accession   NZ_CP053231
Coordinates   2765081..2766205 (-) Length   374 a.a.
NCBI ID   WP_000228509.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-306     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2760081..2771205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ44_RS13355 (HHJ44_13350) yrdA 2761881..2762435 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  HHJ44_RS13360 (HHJ44_13355) yrdB 2762411..2762668 (-) 258 WP_001070567.1 DUF1488 domain-containing protein -
  HHJ44_RS13365 (HHJ44_13360) aroE 2762665..2763483 (-) 819 WP_000451230.1 shikimate dehydrogenase -
  HHJ44_RS13370 (HHJ44_13365) tsaC 2763488..2764060 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  HHJ44_RS13375 (HHJ44_13370) yrdD 2764065..2764607 (-) 543 WP_001312137.1 type I DNA topoisomerase -
  HHJ44_RS13380 (HHJ44_13375) smg 2764636..2765109 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  HHJ44_RS13385 (HHJ44_13380) dprA 2765081..2766205 (-) 1125 WP_000228509.1 DNA-protecting protein DprA Machinery gene
  HHJ44_RS13390 (HHJ44_13385) def 2766335..2766844 (+) 510 WP_000114984.1 peptide deformylase -
  HHJ44_RS13395 (HHJ44_13390) fmt 2766859..2767806 (+) 948 WP_000004421.1 methionyl-tRNA formyltransferase -
  HHJ44_RS13400 (HHJ44_13395) rsmB 2767858..2769147 (+) 1290 WP_000744766.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HHJ44_RS13405 (HHJ44_13400) trkA 2769169..2770545 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  HHJ44_RS13410 (HHJ44_13405) mscL 2770675..2771088 (+) 414 WP_000022450.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40991.96 Da        Isoelectric Point: 6.1815

>NTDB_id=443656 HHJ44_RS13385 WP_000228509.1 2765081..2766205(-) (dprA) [Escherichia coli strain SCU-306]
MVDTEIWLRLISISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWRRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=443656 HHJ44_RS13385 WP_000228509.1 2765081..2766205(-) (dprA) [Escherichia coli strain SCU-306]
ATGGTTGATACAGAAATTTGGCTGCGTTTAATTAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGAGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT
TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

43.917

90.107

0.396
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39