Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HLG77_RS01650 Genome accession   NZ_CP053218
Coordinates   342215..343033 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337215..348033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS01620 (HLG77_01620) rpoZ 337966..338244 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HLG77_RS01625 (HLG77_01625) gmk 338317..338946 (-) 630 WP_000015937.1 guanylate kinase -
  HLG77_RS01630 (HLG77_01630) ispH 339069..340019 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLG77_RS01635 (HLG77_01635) fimU 340189..340662 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLG77_RS01640 (HLG77_01640) pilV 340656..341216 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HLG77_RS01645 (HLG77_01645) pilW 341217..342218 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  HLG77_RS01650 (HLG77_01650) pilX 342215..343033 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HLG77_RS01655 (HLG77_01655) pilY1 343045..346899 (+) 3855 WP_179993674.1 PilC/PilY family type IV pilus protein Machinery gene
  HLG77_RS01660 (HLG77_01660) pilY2 346912..347394 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HLG77_RS01665 (HLG77_01665) pilE 347391..347816 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=443570 HLG77_RS01650 WP_000149374.1 342215..343033(+) (pilX) [Acinetobacter baumannii strain DT01139C]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=443570 HLG77_RS01650 WP_000149374.1 342215..343033(+) (pilX) [Acinetobacter baumannii strain DT01139C]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993