Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HLG77_RS01640 Genome accession   NZ_CP053218
Coordinates   340656..341216 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335656..346216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS01620 (HLG77_01620) rpoZ 337966..338244 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HLG77_RS01625 (HLG77_01625) gmk 338317..338946 (-) 630 WP_000015937.1 guanylate kinase -
  HLG77_RS01630 (HLG77_01630) ispH 339069..340019 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLG77_RS01635 (HLG77_01635) fimU 340189..340662 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLG77_RS01640 (HLG77_01640) pilV 340656..341216 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HLG77_RS01645 (HLG77_01645) pilW 341217..342218 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  HLG77_RS01650 (HLG77_01650) pilX 342215..343033 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=443568 HLG77_RS01640 WP_002194578.1 340656..341216(+) (pilV) [Acinetobacter baumannii strain DT01139C]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=443568 HLG77_RS01640 WP_002194578.1 340656..341216(+) (pilV) [Acinetobacter baumannii strain DT01139C]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414