Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HLG77_RS01635 Genome accession   NZ_CP053218
Coordinates   340189..340662 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335189..345662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS01610 (HLG77_01610) - 335653..337758 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  HLG77_RS01620 (HLG77_01620) rpoZ 337966..338244 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HLG77_RS01625 (HLG77_01625) gmk 338317..338946 (-) 630 WP_000015937.1 guanylate kinase -
  HLG77_RS01630 (HLG77_01630) ispH 339069..340019 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HLG77_RS01635 (HLG77_01635) fimU 340189..340662 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HLG77_RS01640 (HLG77_01640) pilV 340656..341216 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HLG77_RS01645 (HLG77_01645) pilW 341217..342218 (+) 1002 WP_002057668.1 PilW family protein Machinery gene
  HLG77_RS01650 (HLG77_01650) pilX 342215..343033 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=443567 HLG77_RS01635 WP_001214065.1 340189..340662(+) (fimU) [Acinetobacter baumannii strain DT01139C]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=443567 HLG77_RS01635 WP_001214065.1 340189..340662(+) (fimU) [Acinetobacter baumannii strain DT01139C]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1