Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HLG77_RS01525 Genome accession   NZ_CP053218
Coordinates   315303..316043 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310303..321043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS01510 (HLG77_01510) ponA 310892..313447 (-) 2556 WP_005137336.1 penicillin-binding protein PBP1a -
  HLG77_RS01515 (HLG77_01515) pilM 313608..314666 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HLG77_RS01520 (HLG77_01520) - 314666..315306 (+) 641 Protein_289 PilN domain-containing protein -
  HLG77_RS01525 (HLG77_01525) pilO 315303..316043 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HLG77_RS01530 (HLG77_01530) pilP 316054..316581 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HLG77_RS01535 (HLG77_01535) pilQ 316644..318809 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HLG77_RS01540 (HLG77_01540) aroK 318821..319390 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HLG77_RS01545 (HLG77_01545) aroB 319419..320501 (+) 1083 WP_002057695.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=443564 HLG77_RS01525 WP_000076101.1 315303..316043(+) (pilO) [Acinetobacter baumannii strain DT01139C]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=443564 HLG77_RS01525 WP_000076101.1 315303..316043(+) (pilO) [Acinetobacter baumannii strain DT01139C]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683