Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HLG77_RS01660 Genome accession   NZ_CP053218
Coordinates   346912..347394 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DT01139C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341912..352394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLG77_RS01650 (HLG77_01650) pilX 342215..343033 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HLG77_RS01655 (HLG77_01655) pilY1 343045..346899 (+) 3855 WP_179993674.1 PilC/PilY family type IV pilus protein Machinery gene
  HLG77_RS01660 (HLG77_01660) pilY2 346912..347394 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HLG77_RS01665 (HLG77_01665) pilE 347391..347816 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HLG77_RS01670 (HLG77_01670) rpsP 347963..348214 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HLG77_RS01675 (HLG77_01675) rimM 348234..348782 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HLG77_RS01680 (HLG77_01680) trmD 348828..349568 (+) 741 WP_002057664.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HLG77_RS01685 (HLG77_01685) rplS 349776..350144 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HLG77_RS01690 (HLG77_01690) - 350197..351138 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  HLG77_RS01695 (HLG77_01695) - 351253..352284 (-) 1032 WP_002057662.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=443572 HLG77_RS01660 WP_001046417.1 346912..347394(+) (pilY2) [Acinetobacter baumannii strain DT01139C]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=443572 HLG77_RS01660 WP_001046417.1 346912..347394(+) (pilY2) [Acinetobacter baumannii strain DT01139C]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444