Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   HKM25_RS09045 Genome accession   NZ_CP053210
Coordinates   1784527..1785186 (+) Length   219 a.a.
NCBI ID   WP_000565010.1    Uniprot ID   A0A0B7M2C6
Organism   Streptococcus pneumoniae strain 6A-10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779527..1790186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM25_RS09005 (HKM25_1842) mgaSpn 1779788..1781269 (-) 1482 WP_001205281.1 virulence factor transcriptional regulator MgaSpn -
  HKM25_RS09010 (HKM25_1843) - 1781712..1781876 (+) 165 WP_001809002.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  HKM25_RS09015 (HKM25_1844) amaP 1781960..1782526 (+) 567 WP_000030213.1 alkaline shock response membrane anchor protein AmaP -
  HKM25_RS09020 (HKM25_1845) - 1782538..1782708 (+) 171 WP_000455066.1 DUF2273 domain-containing protein -
  HKM25_RS09025 (HKM25_1846) - 1782747..1783355 (+) 609 WP_000064111.1 Asp23/Gls24 family envelope stress response protein -
  HKM25_RS09030 (HKM25_1847) - 1783386..1783589 (+) 204 WP_000109957.1 CsbD family protein -
  HKM25_RS09035 - 1783699..1783992 (-) 294 WP_306423777.1 transposase -
  HKM25_RS09040 (HKM25_1848) - 1784011..1784457 (-) 447 WP_000155428.1 GNAT family N-acetyltransferase -
  HKM25_RS09045 (HKM25_1849) cclA/cilC 1784527..1785186 (+) 660 WP_000565010.1 A24 family peptidase Machinery gene
  HKM25_RS09050 (HKM25_1850) - 1785238..1786389 (-) 1152 WP_000481760.1 XRE family transcriptional regulator -
  HKM25_RS09055 (HKM25_1851) - 1786404..1787135 (-) 732 WP_000934015.1 hypothetical protein -
  HKM25_RS09060 - 1787364..1787465 (+) 102 Protein_1809 prepilin peptidase -
  HKM25_RS09065 (HKM25_1852) trpA 1787437..1788213 (-) 777 WP_001127009.1 tryptophan synthase subunit alpha -
  HKM25_RS09070 (HKM25_1853) trpB 1788206..1789429 (-) 1224 WP_000331293.1 tryptophan synthase subunit beta -
  HKM25_RS09075 (HKM25_1854) - 1789407..1790006 (-) 600 WP_000169915.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24845.99 Da        Isoelectric Point: 7.5762

>NTDB_id=443455 HKM25_RS09045 WP_000565010.1 1784527..1785186(+) (cclA/cilC) [Streptococcus pneumoniae strain 6A-10]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTRLRPLDLIPILSQVFNRFCCRYCKVRYPVWYALFELGLG
LLFLLYSWELLSLSQVILITAGLTLGIYDFRHQEYPLLVWMTFHLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=443455 HKM25_RS09045 WP_000565010.1 1784527..1785186(+) (cclA/cilC) [Streptococcus pneumoniae strain 6A-10]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTTGCTGTCGCTACTGCAAGGTCCGCTATCCTGTCTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAATTACTTTCCTTGAGTCAAGTCATCCTAATCACTGCTGGTTTGACCTTGGGCAT
CTACGACTTTCGCCATCAGGAATATCCCTTACTGGTCTGGATGACTTTCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTT
TTTTTAGCTTCTTGCGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M2C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

100

100

1
  cclA/cilC Streptococcus pneumoniae D39

100

100

1
  cclA/cilC Streptococcus pneumoniae R6

100

100

1
  cclA/cilC Streptococcus pneumoniae TIGR4

94.977

100

0.95
  cclA/cilC Streptococcus mitis SK321

92.694

100

0.927
  cclA/cilC Streptococcus mitis NCTC 12261

87.671

100

0.877