Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GU833_RS18290 Genome accession   NZ_CP053107
Coordinates   4214806..4215339 (+) Length   177 a.a.
NCBI ID   WP_036811562.1    Uniprot ID   -
Organism   Photorhabdus akhurstii strain 0805-P2R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4209806..4220339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU833_RS18280 (GU833_18125) - 4210733..4211695 (+) 963 WP_391528463.1 pseudouridine-5'-phosphate glycosidase -
  GU833_RS18285 (GU833_18130) uvrA 4211735..4214569 (-) 2835 WP_391528464.1 excinuclease ABC subunit UvrA -
  GU833_RS18290 (GU833_18135) ssb 4214806..4215339 (+) 534 WP_036811562.1 single-stranded DNA-binding protein Machinery gene
  GU833_RS18295 (GU833_18140) crtB 4215580..4216506 (-) 927 WP_391528465.1 15-cis-phytoene synthase CrtB -
  GU833_RS18300 (GU833_18145) - 4216503..4217984 (-) 1482 WP_391528466.1 phytoene desaturase -
  GU833_RS18305 (GU833_18150) crtY 4217977..4219152 (-) 1176 WP_391528467.1 lycopene beta-cyclase CrtY -
  GU833_RS18310 (GU833_18155) fni 4219266..4220297 (-) 1032 WP_391528468.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19317.36 Da        Isoelectric Point: 4.9567

>NTDB_id=443176 GU833_RS18290 WP_036811562.1 4214806..4215339(+) (ssb) [Photorhabdus akhurstii strain 0805-P2R]
MASRGINKVILIGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGEMKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQNGQERYTTEVVVNMGGTMQMLGGRAGGGNFQDSQPQGGGWGQPQQPQPQQQSQQFSGGGAPSRPAQSS
APQSSEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=443176 GU833_RS18290 WP_036811562.1 4214806..4215339(+) (ssb) [Photorhabdus akhurstii strain 0805-P2R]
ATGGCCAGCAGAGGCATAAACAAAGTTATTTTAATCGGTAACCTGGGGCAAGACCCGGAAGTCCGCTATATGCCAAACGG
CGGTGCAGTGACTAACATTACTCTGGCGACTTCTGAAAGCTGGCGCGATAAACAGACCGGCGAGATGAAAGAGAAGACTG
AATGGCACCGGGTTGTTTTATTTGGCAAACTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGTTCTCTGCAAACCCGCAAATGGCAGGATCAGAACGGTCAAGAGCGTTACACCACAGAAGTAGTGGTAAACATGGG
TGGTACCATGCAAATGCTGGGTGGCCGTGCTGGTGGTGGTAATTTCCAGGATAGCCAACCGCAAGGCGGCGGTTGGGGAC
AGCCACAGCAGCCACAACCACAGCAACAATCTCAGCAGTTCAGCGGTGGCGGCGCTCCTTCACGCCCAGCTCAATCCTCC
GCTCCACAAAGCAGTGAGCCGCCAATGGATTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.585

100

0.74
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.599
  ssb Neisseria meningitidis MC58

48.087

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.087

100

0.497