Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HKO16_RS16630 Genome accession   NZ_CP053098
Coordinates   3496918..3497400 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491918..3502400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16595 (HKO16_16620) - 3492026..3493060 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  HKO16_RS16600 (HKO16_16625) - 3493175..3494116 (+) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  HKO16_RS16605 (HKO16_16630) rplS 3494168..3494536 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  HKO16_RS16610 (HKO16_16635) trmD 3494744..3495484 (-) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HKO16_RS16615 (HKO16_16640) rimM 3495530..3496078 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  HKO16_RS16620 (HKO16_16645) rpsP 3496098..3496349 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  HKO16_RS16625 (HKO16_16650) pilE 3496496..3496921 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  HKO16_RS16630 (HKO16_16655) pilY2 3496918..3497400 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  HKO16_RS16635 (HKO16_16660) pilY1 3497413..3501267 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  HKO16_RS16640 (HKO16_16665) pilX 3501279..3502097 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=442997 HKO16_RS16630 WP_001046417.1 3496918..3497400(-) (pilY2) [Acinetobacter baumannii ATCC 17978]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=442997 HKO16_RS16630 WP_001046417.1 3496918..3497400(-) (pilY2) [Acinetobacter baumannii ATCC 17978]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444