Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | COCOR_RS05070 | Genome accession | NC_017030 |
| Coordinates | 1220126..1220629 (+) | Length | 167 a.a. |
| NCBI ID | WP_014393863.1 | Uniprot ID | H8MMS9 |
| Organism | Corallococcus coralloides DSM 2259 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1215126..1225629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COCOR_RS05060 (COCOR_01010) | - | 1215893..1217491 (-) | 1599 | WP_014393861.1 | ABC transporter substrate-binding protein | - |
| COCOR_RS05065 (COCOR_01011) | dacB | 1217626..1219863 (+) | 2238 | WP_014393862.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| COCOR_RS05070 (COCOR_01012) | ssb | 1220126..1220629 (+) | 504 | WP_014393863.1 | single-stranded DNA-binding protein | Machinery gene |
| COCOR_RS05075 (COCOR_01013) | - | 1220724..1221407 (-) | 684 | WP_014393864.1 | succinate dehydrogenase | - |
| COCOR_RS05080 (COCOR_01014) | - | 1221681..1222574 (+) | 894 | WP_043321052.1 | Hsp33 family molecular chaperone HslO | - |
| COCOR_RS05085 (COCOR_01015) | - | 1222749..1223444 (+) | 696 | WP_014393866.1 | phosphoribosyltransferase | - |
| COCOR_RS05090 (COCOR_01016) | selB | 1223472..1225400 (+) | 1929 | WP_014393867.1 | selenocysteine-specific translation elongation factor | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18038.84 Da Isoelectric Point: 5.8010
>NTDB_id=44294 COCOR_RS05070 WP_014393863.1 1220126..1220629(+) (ssb) [Corallococcus coralloides DSM 2259]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGNGGGRRQQQGNGGYSQGRDDYGQPPPPMDDGGGMGGNHGG
ADDDIPF
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGNGGGRRQQQGNGGYSQGRDDYGQPPPPMDDGGGMGGNHGG
ADDDIPF
Nucleotide
Download Length: 504 bp
>NTDB_id=44294 COCOR_RS05070 WP_014393863.1 1220126..1220629(+) (ssb) [Corallococcus coralloides DSM 2259]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAATGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAATGGCGGGGGTCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACTCGCAGGGGCGTGACGACTACGGCCAGCCGCCGCCTCCCATGGATGACGGTGGCGGCATGGGCGGCAACCACGGCGGC
GCGGACGACGACATCCCGTTCTAA
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAATGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAATGGCGGGGGTCGCCGGCAGCAGCAGGGCAACGGCGGCT
ACTCGCAGGGGCGTGACGACTACGGCCAGCCGCCGCCTCCCATGGATGACGGTGGCGGCATGGGCGGCAACCACGGCGGC
GCGGACGACGACATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.283 |
100 |
0.521 |
| ssb | Glaesserella parasuis strain SC1401 |
42.458 |
100 |
0.455 |
| ssb | Neisseria meningitidis MC58 |
42.197 |
100 |
0.437 |
| ssb | Neisseria gonorrhoeae MS11 |
42.197 |
100 |
0.437 |