Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKM20_RS09675 Genome accession   NZ_CP053086
Coordinates   1968344..1968820 (+) Length   158 a.a.
NCBI ID   WP_090832385.1    Uniprot ID   -
Organism   Pelagibacterium halotolerans strain ANSP101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1963344..1973820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM20_RS09650 (HKM20_09655) - 1963421..1963570 (-) 150 WP_014130631.1 DUF1127 domain-containing protein -
  HKM20_RS09655 (HKM20_09660) - 1963712..1964362 (+) 651 WP_014130630.1 glutathione S-transferase family protein -
  HKM20_RS09660 (HKM20_09665) - 1964428..1964577 (-) 150 WP_014130629.1 DUF1127 domain-containing protein -
  HKM20_RS09665 (HKM20_09670) - 1964848..1965009 (-) 162 WP_158308058.1 hypothetical protein -
  HKM20_RS09670 (HKM20_09675) uvrA 1965133..1968024 (-) 2892 WP_014130628.1 excinuclease ABC subunit UvrA -
  HKM20_RS09675 (HKM20_09680) ssb 1968344..1968820 (+) 477 WP_090832385.1 single-stranded DNA-binding protein Machinery gene
  HKM20_RS09680 (HKM20_09685) - 1968881..1969378 (-) 498 WP_014130626.1 hypothetical protein -
  HKM20_RS09685 (HKM20_09690) - 1969548..1971806 (-) 2259 WP_014130625.1 efflux RND transporter permease subunit -
  HKM20_RS09690 (HKM20_09695) - 1971901..1972335 (-) 435 WP_014130624.1 Lrp/AsnC family transcriptional regulator -
  HKM20_RS09695 (HKM20_09700) rocF 1972453..1973379 (+) 927 WP_014130623.1 arginase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17281.15 Da        Isoelectric Point: 5.9617

>NTDB_id=442927 HKM20_RS09675 WP_090832385.1 1968344..1968820(+) (ssb) [Pelagibacterium halotolerans strain ANSP101]
MSGSVNKVILVGNLGADPEVRSLPNGNPVVNLRIATSERWRDRNSGEPREKTEWHRVVIFSEGLAKVAQNYLKKGAKVYI
EGQLQTRKWEKDGQDQYTTEIVLQGFNSTLTMLDGRGEGGGDRDSGGYGGGSRQVENRGRPSSAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=442927 HKM20_RS09675 WP_090832385.1 1968344..1968820(+) (ssb) [Pelagibacterium halotolerans strain ANSP101]
ATGTCGGGAAGCGTGAACAAGGTTATTCTGGTTGGCAATCTGGGTGCCGACCCCGAAGTGCGGTCGCTGCCCAACGGCAA
TCCGGTGGTCAATCTGCGTATTGCGACGTCGGAGCGCTGGCGCGACCGCAATTCGGGCGAGCCGCGCGAAAAGACTGAAT
GGCACCGGGTTGTGATTTTCAGCGAAGGGCTGGCCAAGGTGGCCCAGAACTATCTCAAAAAGGGCGCCAAGGTTTATATC
GAGGGCCAGCTCCAGACCCGGAAATGGGAGAAGGACGGGCAGGACCAGTACACGACCGAGATCGTGCTGCAGGGTTTCAA
TTCGACCCTGACCATGCTCGACGGGCGCGGTGAAGGCGGCGGTGACCGCGACAGCGGCGGATATGGTGGCGGCAGCCGGC
AGGTCGAAAACCGCGGGCGGCCGTCCAGCGCTCCGGCGTTCGAGCCGGGTGGCATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.557
  ssb Vibrio cholerae strain A1552

50.289

100

0.551
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.487
  ssb Neisseria meningitidis MC58

41.899

100

0.475