Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKT17_RS02080 Genome accession   NZ_CP053084
Coordinates   446959..447462 (+) Length   167 a.a.
NCBI ID   WP_171097448.1    Uniprot ID   -
Organism   Limnobacter sp. SAORIC-580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 441959..452462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKT17_RS02065 (HKT17_02070) - 441975..442598 (+) 624 WP_171097442.1 hypothetical protein -
  HKT17_RS02070 (HKT17_02075) uvrA 442599..445481 (-) 2883 WP_171097444.1 excinuclease ABC subunit UvrA -
  HKT17_RS02075 (HKT17_02080) - 445584..446864 (+) 1281 WP_171097446.1 MFS transporter -
  HKT17_RS02080 (HKT17_02085) ssb 446959..447462 (+) 504 WP_171097448.1 single-stranded DNA-binding protein Machinery gene
  HKT17_RS02085 (HKT17_02090) - 447589..448014 (+) 426 WP_171097450.1 hypothetical protein -
  HKT17_RS02090 (HKT17_02095) - 448011..449867 (-) 1857 WP_171097451.1 hybrid sensor histidine kinase/response regulator -
  HKT17_RS02095 (HKT17_02100) - 449756..450373 (-) 618 WP_171097453.1 response regulator -
  HKT17_RS02100 (HKT17_02105) - 450505..451164 (+) 660 WP_171097455.1 fumarylacetoacetate hydrolase family protein -
  HKT17_RS02105 (HKT17_02110) - 451169..451669 (+) 501 WP_171097456.1 DUF411 domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17806.74 Da        Isoelectric Point: 5.3093

>NTDB_id=442899 HKT17_RS02080 WP_171097448.1 446959..447462(+) (ssb) [Limnobacter sp. SAORIC-580]
MASVNKVILVGNLGKDPDVRYLPDGGAVVNLALATSSSWKDKNTGEKREETEWHRVVIYGRLAEIAGEYCKKGRSVYIEG
RLKTRKWQDQSGVDKYTTEIIADQMQLLGGREGGGGGGGSSMGAGDDFDQSPAPSRNSGGSSMRSSAPAPQRSAPQSVAD
LDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=442899 HKT17_RS02080 WP_171097448.1 446959..447462(+) (ssb) [Limnobacter sp. SAORIC-580]
ATGGCCTCAGTAAACAAAGTAATTCTGGTTGGTAATTTGGGCAAAGACCCCGACGTGCGCTACCTGCCCGATGGCGGTGC
TGTAGTGAACCTGGCCTTGGCCACGTCGAGCAGCTGGAAAGACAAAAACACGGGTGAAAAGCGCGAAGAAACTGAATGGC
ACCGTGTTGTAATTTATGGCCGCCTGGCGGAAATTGCAGGCGAGTACTGCAAGAAAGGCCGCTCGGTGTATATCGAGGGC
CGTCTGAAAACACGCAAGTGGCAAGACCAGTCGGGCGTGGATAAATACACCACTGAAATTATTGCAGATCAGATGCAATT
GCTGGGTGGTCGTGAGGGCGGTGGTGGCGGCGGTGGTTCATCCATGGGGGCAGGCGATGATTTTGATCAGTCGCCAGCGC
CTAGCCGCAACTCGGGTGGCAGCAGCATGCGTTCATCTGCACCTGCACCGCAGCGCTCAGCCCCACAAAGCGTGGCCGAT
CTGGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.889

100

0.581
  ssb Glaesserella parasuis strain SC1401

49.18

100

0.539
  ssb Neisseria meningitidis MC58

44.828

100

0.467
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.467