Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HK408_RS22790 Genome accession   NZ_CP053079
Coordinates   4701743..4702279 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain K56-43-un     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4696743..4707279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK408_RS22770 (HK408_22800) soxR 4698472..4698936 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HK408_RS22775 (HK408_22805) soxS 4699022..4699345 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HK408_RS22780 (HK408_22810) pdeC 4699381..4700934 (-) 1554 WP_178943779.1 c-di-GMP phosphodiesterase PdeC -
  HK408_RS22785 (HK408_22815) yjcB 4701363..4701644 (+) 282 WP_001296643.1 YjcB family protein -
  HK408_RS22790 (HK408_22820) ssb 4701743..4702279 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HK408_RS22795 (HK408_22825) uvrA 4702534..4705356 (+) 2823 WP_000357768.1 excinuclease ABC subunit UvrA -
  HK408_RS22800 (HK408_22830) yjbR 4705565..4705921 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HK408_RS22805 (HK408_22835) yjbQ 4705925..4706341 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HK408_RS22810 (HK408_22840) aphA 4706452..4707165 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=442869 HK408_RS22790 WP_000168305.1 4701743..4702279(-) (ssb) [Escherichia coli strain K56-43-un]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=442869 HK408_RS22790 WP_000168305.1 4701743..4702279(-) (ssb) [Escherichia coli strain K56-43-un]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489