Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HHM66_RS10365 Genome accession   NZ_CP053074
Coordinates   2096083..2097219 (-) Length   378 a.a.
NCBI ID   WP_003058758.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2094384..2095967 2096083..2097219 flank 116


Gene organization within MGE regions


Location: 2094384..2097219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS10360 (HHM66_10385) - 2094484..2095967 (-) 1484 Protein_1998 IS1182 family transposase -
  HHM66_RS10365 (HHM66_10390) recA 2096083..2097219 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40644.27 Da        Isoelectric Point: 4.8451

>NTDB_id=442804 HHM66_RS10365 WP_003058758.1 2096083..2097219(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMAVAAEETDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=442804 HHM66_RS10365 WP_003058758.1 2096083..2097219(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
TTGGCAAAAAAATTGAAAAAAAACGAAGAAATCACTAAAAAATTTGGTGACGAGCGTCGTAAGGCACTTGATGATGCCCT
AAAAAATATTGAAAAAGATTTTGGTAAGGGTGCAGTGATGCGCTTGGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGCCTAGCTCTTGATATTGCGCTTGGAGCAGGTGGTTATCCTAAAGGACGTATCATTGAGATCTATGGTCCA
GAATCTTCTGGTAAAACAACTGTGGCTTTACATGCTGTGGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTACGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
GATGCGTAAGCTATCAGCTTCTATTAACAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCGGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTTCGTTTAGATGTGCGTGGA
ACCACTCAAATTAAAGGAACTGGTGACCAAAAAGACAGTAGTATTGGTAAAGAAACAAAAATCAAAGTTGTTAAAAACAA
GGTAGCTCCTCCGTTTAAAGTGGCAGAGGTTGAAATCATGTATGGAGAAGGCATTTCCCGTACTGGAGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAAATTGGTCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCGGATCATCCAGAATTATTTGATGAGATTGATCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTGGCGGCAGAAGAAACCGATGATCTTGTTTTAGATTTAGATAACGGGA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

98.942

100

0.989
  recA Streptococcus mutans UA159

87.99

100

0.892
  recA Streptococcus mitis SK321

85.564

100

0.862
  recA Streptococcus mitis NCTC 12261

85.34

100

0.862
  recA Streptococcus pneumoniae Rx1

84.675

100

0.862
  recA Streptococcus pneumoniae D39

84.675

100

0.862
  recA Streptococcus pneumoniae R6

84.675

100

0.862
  recA Streptococcus pneumoniae TIGR4

84.675

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.315

89.153

0.556
  recA Acinetobacter baumannii D1279779

59.207

93.386

0.553
  recA Acinetobacter baylyi ADP1

59.544

92.857

0.553
  recA Glaesserella parasuis strain SC1401

57.143

96.296

0.55
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae strain FA1090

60.35

90.741

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85.45

0.537
  recA Vibrio cholerae strain A1552

61.231

85.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

85.979

0.526
  recA Pseudomonas stutzeri DSM 10701

57.184

92.063

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.566

0.519
  recA Helicobacter pylori 26695

58.084

88.36

0.513
  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513
  recA Ralstonia pseudosolanacearum GMI1000

58.133

87.831

0.511