Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM104440_RS15835 Genome accession   NZ_CP053073
Coordinates   3246629..3247102 (-) Length   157 a.a.
NCBI ID   WP_171164317.1    Uniprot ID   A0A6M4HCR0
Organism   Usitatibacter palustris strain Swamp67     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3241629..3252102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS15810 (DSM104440_03138) - 3242041..3242964 (-) 924 WP_171164309.1 isoaspartyl peptidase/L-asparaginase family protein -
  DSM104440_RS15815 (DSM104440_03139) aspS 3242961..3244751 (-) 1791 WP_171164311.1 aspartate--tRNA ligase -
  DSM104440_RS15820 (DSM104440_03140) - 3244759..3245352 (-) 594 WP_171166029.1 DUF502 domain-containing protein -
  DSM104440_RS15825 (DSM104440_03141) - 3245359..3245679 (-) 321 WP_171164313.1 zinc ribbon domain-containing protein -
  DSM104440_RS15830 (DSM104440_03142) htpX 3245725..3246597 (-) 873 WP_171164315.1 protease HtpX -
  DSM104440_RS15835 (DSM104440_03143) ssb 3246629..3247102 (-) 474 WP_171164317.1 single-stranded DNA-binding protein Machinery gene
  DSM104440_RS15840 (DSM104440_03144) - 3247118..3248350 (-) 1233 WP_171164319.1 MFS transporter -
  DSM104440_RS15845 (DSM104440_03145) uvrA 3248443..3251313 (+) 2871 WP_171164321.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17004.91 Da        Isoelectric Point: 5.9980

>NTDB_id=442744 DSM104440_RS15835 WP_171164317.1 3246629..3247102(-) (ssb) [Usitatibacter palustris strain Swamp67]
MASVNKVILVGNLGRDPETRYIPDGGAVTNISVATTETWKDKSGEKQEKTEWHRVAFFGKLAEIAGEYLKKGSQVYVEGR
LQTREWEKDGVKRYSTEIIADRMQMLGSRQGMGGGERSERGDVGGGGGGGERPASSSAKPAAKSGGKFDDFEDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=442744 DSM104440_RS15835 WP_171164317.1 3246629..3247102(-) (ssb) [Usitatibacter palustris strain Swamp67]
ATGGCATCGGTGAACAAAGTAATCCTCGTCGGCAACCTCGGGCGCGATCCCGAAACCCGCTACATCCCCGACGGCGGCGC
AGTGACCAATATTTCGGTCGCCACCACGGAGACGTGGAAGGACAAGTCCGGCGAGAAGCAGGAGAAGACCGAATGGCACC
GCGTGGCCTTCTTCGGAAAGCTCGCGGAAATCGCCGGCGAGTACCTGAAGAAAGGCAGCCAGGTGTACGTGGAAGGCCGC
CTCCAGACCCGCGAATGGGAGAAGGACGGCGTGAAGCGCTACTCCACCGAGATCATCGCCGATCGCATGCAGATGCTCGG
CTCGCGCCAGGGCATGGGCGGCGGCGAGCGCAGCGAGCGTGGTGACGTCGGCGGTGGCGGCGGTGGCGGTGAACGGCCCG
CATCGTCGTCGGCGAAGCCGGCTGCGAAGAGCGGCGGCAAGTTCGACGATTTCGAGGACGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4HCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.592
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.548
  ssb Neisseria meningitidis MC58

46.552

100

0.516
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.51