Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSM104443_RS18215 Genome accession   NZ_CP053069
Coordinates   3863435..3863902 (-) Length   155 a.a.
NCBI ID   WP_171094812.1    Uniprot ID   A0A6M4H3U4
Organism   Usitatibacter rugosus strain 0125_3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3858435..3868902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104443_RS18180 (DSM104443_03606) - 3858947..3859282 (-) 336 WP_171094798.1 zinc ribbon domain-containing protein -
  DSM104443_RS18185 (DSM104443_03607) - 3859338..3860495 (-) 1158 WP_171094800.1 MFS transporter -
  DSM104443_RS18190 (DSM104443_03608) htpX 3860560..3861432 (-) 873 WP_171094802.1 protease HtpX -
  DSM104443_RS18195 (DSM104443_03609) - 3861671..3862003 (+) 333 WP_171094804.1 metalloregulator ArsR/SmtB family transcription factor -
  DSM104443_RS18200 (DSM104443_03610) - 3862000..3862521 (+) 522 WP_171094806.1 SRPBCC family protein -
  DSM104443_RS18205 (DSM104443_03611) - 3862540..3862929 (+) 390 WP_171094808.1 DUF1801 domain-containing protein -
  DSM104443_RS18210 (DSM104443_03612) - 3862999..3863388 (+) 390 WP_171094810.1 DUF3597 domain-containing protein -
  DSM104443_RS18215 (DSM104443_03613) ssb 3863435..3863902 (-) 468 WP_171094812.1 single-stranded DNA-binding protein Machinery gene
  DSM104443_RS18220 (DSM104443_03614) - 3864023..3865198 (-) 1176 WP_171094814.1 MFS transporter -
  DSM104443_RS18225 (DSM104443_03615) uvrA 3865270..3868125 (+) 2856 WP_171094816.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16631.56 Da        Isoelectric Point: 5.9788

>NTDB_id=442674 DSM104443_RS18215 WP_171094812.1 3863435..3863902(-) (ssb) [Usitatibacter rugosus strain 0125_3]
MASVNKVILVGNLGRDPETRYMPDGGAVTNVSIATTESWKDKGSGEKQEKTEWHRVAFFGKLAEIAGEYLKKGSQIYVEG
RLQTREWEKDGVKRYTTEIIANSMQMLGSRQGMGGGDRGESGGGAERPAGGAGAAKPAPSKAGGKFDDFEDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=442674 DSM104443_RS18215 WP_171094812.1 3863435..3863902(-) (ssb) [Usitatibacter rugosus strain 0125_3]
ATGGCATCGGTGAACAAGGTCATCCTCGTCGGCAACCTCGGCCGCGACCCCGAAACGCGCTACATGCCCGACGGCGGCGC
GGTGACGAACGTCTCCATCGCCACGACGGAGTCGTGGAAGGACAAGGGCTCCGGCGAGAAGCAGGAGAAGACGGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGTTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGATCGCAGATCTACGTCGAAGGA
CGGCTGCAGACCCGCGAGTGGGAAAAGGACGGCGTGAAGCGCTACACCACCGAGATCATCGCCAACTCGATGCAGATGCT
CGGCTCGCGCCAGGGCATGGGCGGCGGCGACCGCGGCGAATCCGGTGGCGGAGCGGAGCGCCCTGCGGGCGGCGCTGGCG
CGGCCAAGCCGGCACCCTCGAAAGCCGGCGGAAAATTCGACGACTTCGAGGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4H3U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.587
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.568
  ssb Neisseria meningitidis MC58

45.977

100

0.516
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.51