Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKW97_RS02225 Genome accession   NZ_CP053063
Coordinates   456219..456731 (+) Length   170 a.a.
NCBI ID   WP_019366098.1    Uniprot ID   -
Organism   Pseudomonas luteola strain JZ42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 451219..461731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW97_RS02215 (HKW97_02205) uvrA 451671..454505 (-) 2835 WP_407362753.1 excinuclease ABC subunit UvrA -
  HKW97_RS02220 (HKW97_02210) - 454805..456193 (+) 1389 WP_219652512.1 MFS transporter -
  HKW97_RS02225 (HKW97_02215) ssb 456219..456731 (+) 513 WP_019366098.1 single-stranded DNA-binding protein Machinery gene
  HKW97_RS02230 (HKW97_02220) yccS 456983..459196 (+) 2214 WP_173869134.1 YccS family putative transporter -
  HKW97_RS02235 (HKW97_02225) - 459303..460202 (+) 900 WP_010796788.1 sugar nucleotide-binding protein -
  HKW97_RS02240 (HKW97_02230) - 460195..461130 (+) 936 WP_407362754.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18663.52 Da        Isoelectric Point: 5.2781

>NTDB_id=442620 HKW97_RS02225 WP_019366098.1 456219..456731(+) (ssb) [Pseudomonas luteola strain JZ42]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSDSWKDKQTGQQQERTEWHRVVFFGKLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGTMQLLGGRGGASAGGGDEYNQTQQAPRAPRPQQAAAPQRENRPAPAPQQPAPD
YDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=442620 HKW97_RS02225 WP_019366098.1 456219..456731(+) (ssb) [Pseudomonas luteola strain JZ42]
ATGGCTCGTGGTGTTAATAAAGTAATACTGGTCGGGAACGTCGGCGGCGACCCGGAAACTCGTTATATGCCCAATGGCAA
TGCAGTGACCAATGTCACGCTGGCAACCAGTGATAGCTGGAAAGACAAGCAGACCGGCCAGCAGCAAGAGCGTACCGAGT
GGCACCGCGTGGTTTTCTTTGGCAAGTTGGCTGAAATTGCTGGGGAATACCTGCGTAAAGGCTCACAGGTCTATGTGGAA
GGTAGCTTGCGCACCCGTAAGTGGCAGGGCCAGGACGGACAGGACCGCTATACCACCGAGATCGTGGTAGATATCAACGG
TACCATGCAGCTCCTGGGCGGCCGTGGTGGCGCGTCTGCTGGTGGTGGCGATGAATACAATCAGACTCAACAGGCGCCTC
GGGCACCTCGTCCCCAGCAAGCTGCGGCGCCTCAGCGTGAAAACCGTCCGGCACCTGCGCCGCAGCAGCCGGCACCAGAC
TACGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.889

100

0.624
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.565
  ssb Neisseria gonorrhoeae MS11

48.901

100

0.524
  ssb Neisseria meningitidis MC58

47.253

100

0.506