Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   HKW99_RS18085 Genome accession   NZ_CP053061
Coordinates   3870097..3870456 (-) Length   119 a.a.
NCBI ID   WP_407293164.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain JZ60     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3865097..3875456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW99_RS18060 (HKW99_17990) - 3865613..3866167 (-) 555 WP_407293149.1 cytochrome b -
  HKW99_RS18065 (HKW99_17995) - 3866337..3867743 (+) 1407 WP_407293152.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  HKW99_RS18070 (HKW99_18000) - 3867815..3868537 (+) 723 WP_407293155.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HKW99_RS18075 (HKW99_18005) - 3868585..3869052 (-) 468 WP_407293158.1 chemotaxis protein CheW -
  HKW99_RS18080 (HKW99_18010) - 3869049..3870104 (-) 1056 WP_407293161.1 chemotaxis protein CheB -
  HKW99_RS18085 chpA 3870097..3870456 (-) 360 WP_407293164.1 response regulator Regulator

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13633.79 Da        Isoelectric Point: 6.0945

>NTDB_id=442611 HKW99_RS18085 WP_407293164.1 3870097..3870456(-) (chpA) [Stutzerimonas zhaodongensis strain JZ60]
MVVDDSVTVRKVTSRLLERNGMNVLTAKDGVDAITQLQERKPDIILLDIEMPRMDGFEVATLVRHDEHLKDLPIVMITSR
TGEKHRDRAMAIGVNEYLGKPYQESLLLETIQQLVKRHE

Nucleotide


Download         Length: 360 bp        

>NTDB_id=442611 HKW99_RS18085 WP_407293164.1 3870097..3870456(-) (chpA) [Stutzerimonas zhaodongensis strain JZ60]
ATGGTGGTGGACGACTCGGTGACCGTGCGTAAGGTTACCAGCCGCCTTCTGGAGCGAAACGGCATGAACGTACTGACGGC
CAAGGATGGCGTCGACGCGATTACCCAGTTGCAGGAACGTAAGCCGGACATCATCCTGCTTGACATCGAAATGCCGCGGA
TGGACGGCTTCGAGGTGGCGACACTTGTGCGTCACGATGAGCACCTGAAGGATCTGCCAATCGTGATGATTACTTCTCGA
ACTGGCGAAAAGCACAGGGATCGGGCTATGGCCATCGGTGTTAACGAGTATCTAGGCAAGCCGTATCAGGAGTCGCTGCT
ACTCGAGACGATTCAGCAGTTGGTTAAACGTCATGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

68.067

100

0.681
  pilL-C Synechocystis sp. PCC 6803

41.026

98.319

0.403
  pilH Synechocystis sp. PCC 6803

38.793

97.479

0.378
  pilG Acinetobacter baumannii strain A118

37.069

97.479

0.361