Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKW99_RS03220 Genome accession   NZ_CP053061
Coordinates   678016..678510 (+) Length   164 a.a.
NCBI ID   WP_407294938.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain JZ60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 673016..683510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW99_RS03210 (HKW99_03200) uvrA 673510..676347 (-) 2838 WP_407294935.1 excinuclease ABC subunit UvrA -
  HKW99_RS03215 (HKW99_03205) - 676479..677846 (+) 1368 WP_407294937.1 MFS transporter -
  HKW99_RS03220 (HKW99_03210) ssb 678016..678510 (+) 495 WP_407294938.1 single-stranded DNA-binding protein Machinery gene
  HKW99_RS03225 (HKW99_03215) - 678520..679404 (+) 885 WP_407294940.1 sugar nucleotide-binding protein -
  HKW99_RS03230 (HKW99_03220) - 679397..680326 (+) 930 WP_407294942.1 NAD-dependent epimerase/dehydratase family protein -
  HKW99_RS03235 (HKW99_03225) - 680401..681096 (-) 696 WP_407294944.1 OmpW/AlkL family protein -
  HKW99_RS03240 (HKW99_03230) - 681368..682138 (+) 771 WP_407294946.1 DUF3450 domain-containing protein -
  HKW99_RS03245 (HKW99_03235) - 682135..683481 (+) 1347 WP_407294949.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18351.27 Da        Isoelectric Point: 5.2939

>NTDB_id=442589 HKW99_RS03220 WP_407294938.1 678016..678510(+) (ssb) [Stutzerimonas zhaodongensis strain JZ60]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQRDSQPQQQSRPQSQPQPAQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=442589 HKW99_RS03220 WP_407294938.1 678016..678510(+) (ssb) [Stutzerimonas zhaodongensis strain JZ60]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGGTCGGCAATGTCGGCGGCGATCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAATATTACGCTAGCCACGACTGACAGCTGGAAGGATAAGCAGACCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGTGTCGTGCTGTTCGGCAAAGTCGCTGAGATTGCTGGCGAATACCTGCGTAAGGGCTCGCAGTGTTACATCGAA
GGCCGTCTGCAAACCCGTGAATGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTCGTCGACATGGGCGGCAC
CATGCAGCTGCTTGGCGGACGTGGTGGAAGTTCCGATGACGCTCCGCGTCAATCTCAGCCTCGTCCCCAGCGGGATTCGC
AGCCGCAACAGCAGTCGCGCCCGCAGTCTCAGCCGCAGCCTGCTCAGCAGCCGGCGCCTGACTACGACAGCTTCGACGAC
GATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.618

100

0.604
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.518
  ssb Neisseria meningitidis MC58

46.154

100

0.512
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.488