Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKW96_RS26530 Genome accession   NZ_CP053057
Coordinates   5899938..5900450 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain RP4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5894938..5905450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW96_RS26505 (HKW96_26505) - 5895043..5896038 (+) 996 WP_023969348.1 lysylphosphatidylglycerol synthase domain-containing protein -
  HKW96_RS26510 (HKW96_26510) - 5896098..5896853 (-) 756 WP_023969349.1 S9 family peptidase -
  HKW96_RS26515 (HKW96_26515) - 5896843..5897952 (-) 1110 WP_023969350.1 DUF3182 family protein -
  HKW96_RS26520 (HKW96_26520) - 5898135..5899142 (-) 1008 WP_023969351.1 GlxA family transcriptional regulator -
  HKW96_RS26525 (HKW96_26525) - 5899246..5899800 (+) 555 WP_023969352.1 cysteine hydrolase family protein -
  HKW96_RS26530 (HKW96_26530) ssb 5899938..5900450 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  HKW96_RS26535 (HKW96_26535) - 5900460..5901854 (-) 1395 WP_023969353.1 MFS transporter -
  HKW96_RS26540 (HKW96_26540) uvrA 5902035..5904869 (+) 2835 WP_023969354.1 excinuclease ABC subunit UvrA -
  HKW96_RS26545 (HKW96_26545) bfr 5904962..5905426 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=442548 HKW96_RS26530 WP_009045846.1 5899938..5900450(-) (ssb) [Pseudomonas chlororaphis strain RP4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=442548 HKW96_RS26530 WP_009045846.1 5899938..5900450(-) (ssb) [Pseudomonas chlororaphis strain RP4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5