Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HFS97_RS21035 Genome accession   NZ_CP053048
Coordinates   4398715..4399245 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Derby strain CVM 30155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4393715..4404245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFS97_RS21020 (HFS97_21005) siiC 4394349..4395668 (-) 1320 WP_001670706.1 SPI-4 type I secretion system protein SiiC -
  HFS97_RS21025 (HFS97_21010) - 4395658..4397046 (-) 1389 WP_000875183.1 MotA/TolQ/ExbB proton channel family protein -
  HFS97_RS21030 (HFS97_21015) siiA 4397043..4397675 (-) 633 WP_000389245.1 SPI-4 type I secretion system auxiliary protein SiiA -
  HFS97_RS21035 (HFS97_21020) ssb 4398715..4399245 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HFS97_RS21040 (HFS97_21025) uvrA 4399493..4402318 (+) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  HFS97_RS21045 (HFS97_21030) - 4402450..4402905 (+) 456 WP_000432197.1 hypothetical protein -
  HFS97_RS21050 (HFS97_21035) - 4402892..4403230 (+) 339 WP_000146587.1 hypothetical protein -
  HFS97_RS21055 (HFS97_21040) - 4403231..4403587 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  HFS97_RS21060 (HFS97_21045) - 4403590..4404006 (-) 417 WP_093931649.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=442480 HFS97_RS21035 WP_000168322.1 4398715..4399245(-) (ssb) [Salmonella enterica subsp. enterica serovar Derby strain CVM 30155]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=442480 HFS97_RS21035 WP_000168322.1 4398715..4399245(-) (ssb) [Salmonella enterica subsp. enterica serovar Derby strain CVM 30155]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477