Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HG538_RS13770 | Genome accession | NZ_CP053045 |
| Coordinates | 2839364..2839870 (+) | Length | 168 a.a. |
| NCBI ID | WP_000168274.1 | Uniprot ID | A0A9X0Q0X8 |
| Organism | Escherichia fergusonii strain HNCF11W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2802864..2842633 | 2839364..2839870 | within | 0 |
Gene organization within MGE regions
Location: 2802864..2842633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG538_RS13495 (HG538_13505) | - | 2802864..2803253 (-) | 390 | WP_171882074.1 | S24 family peptidase | - |
| HG538_RS13500 (HG538_13510) | - | 2803357..2804388 (-) | 1032 | WP_104726698.1 | acyltransferase | - |
| HG538_RS13505 (HG538_13515) | - | 2804449..2806491 (-) | 2043 | WP_171882075.1 | phage head-binding domain-containing protein | - |
| HG538_RS13510 (HG538_13520) | - | 2806763..2807182 (-) | 420 | WP_032219545.1 | hypothetical protein | - |
| HG538_RS13515 (HG538_13525) | - | 2807187..2807630 (-) | 444 | WP_032219532.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
| HG538_RS13520 (HG538_13530) | - | 2808009..2808494 (+) | 486 | WP_016231948.1 | hypothetical protein | - |
| HG538_RS23335 | - | 2808576..2808665 (+) | 90 | Protein_2647 | Arc family DNA-binding protein | - |
| HG538_RS13530 (HG538_13540) | - | 2808683..2810914 (-) | 2232 | WP_253940420.1 | hypothetical protein | - |
| HG538_RS13535 (HG538_13545) | - | 2810911..2812323 (-) | 1413 | WP_171882076.1 | phage DNA ejection protein | - |
| HG538_RS13540 (HG538_13550) | - | 2812333..2813013 (-) | 681 | WP_001544386.1 | hypothetical protein | - |
| HG538_RS13545 (HG538_13555) | - | 2813000..2813467 (-) | 468 | WP_046082882.1 | DUF2824 family protein | - |
| HG538_RS13550 (HG538_13560) | - | 2813467..2814315 (-) | 849 | WP_171882077.1 | tail needle knob protein | - |
| HG538_RS13555 (HG538_13565) | - | 2814315..2815733 (-) | 1419 | WP_171882078.1 | packaged DNA stabilization protein gp10 | - |
| HG538_RS13560 (HG538_13570) | - | 2815743..2816204 (-) | 462 | WP_001140510.1 | packaged DNA stabilization gp4 family protein | - |
| HG538_RS13565 (HG538_13575) | - | 2816185..2816373 (-) | 189 | WP_069905690.1 | hypothetical protein | - |
| HG538_RS13570 (HG538_13580) | - | 2816415..2817668 (-) | 1254 | WP_016248918.1 | P22 phage major capsid protein family protein | - |
| HG538_RS13575 (HG538_13585) | - | 2817687..2818580 (-) | 894 | WP_021560734.1 | phage scaffold protein | - |
| HG538_RS13580 (HG538_13590) | - | 2818671..2820869 (-) | 2199 | WP_171882079.1 | portal protein | - |
| HG538_RS13585 (HG538_13595) | - | 2820871..2822286 (-) | 1416 | WP_171882080.1 | PBSX family phage terminase large subunit | - |
| HG538_RS13590 (HG538_13600) | - | 2822283..2822723 (-) | 441 | WP_000113732.1 | hypothetical protein | - |
| HG538_RS13595 (HG538_13605) | - | 2822726..2822968 (-) | 243 | WP_000807788.1 | DUF2560 family protein | - |
| HG538_RS13600 (HG538_13610) | - | 2823072..2823443 (-) | 372 | WP_000999679.1 | Gp49 family protein | - |
| HG538_RS13605 (HG538_13615) | - | 2823622..2824107 (-) | 486 | WP_001058931.1 | GIY-YIG nuclease family protein | - |
| HG538_RS13610 (HG538_13620) | - | 2824309..2824461 (-) | 153 | WP_001139680.1 | hypothetical protein | - |
| HG538_RS13615 (HG538_13625) | - | 2824449..2824886 (-) | 438 | WP_171882081.1 | lysis protein | - |
| HG538_RS13620 (HG538_13630) | - | 2824883..2825359 (-) | 477 | WP_000229392.1 | glycoside hydrolase family protein | - |
| HG538_RS13625 (HG538_13635) | - | 2825343..2825666 (-) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| HG538_RS13640 (HG538_13650) | - | 2826156..2826644 (-) | 489 | WP_000512806.1 | antiterminator Q family protein | - |
| HG538_RS13645 (HG538_13655) | - | 2826635..2827306 (-) | 672 | WP_171882082.1 | serine/threonine protein phosphatase | - |
| HG538_RS13650 (HG538_13660) | - | 2827284..2827490 (-) | 207 | WP_000144614.1 | phage NinH family protein | - |
| HG538_RS13655 (HG538_13665) | - | 2827487..2828098 (-) | 612 | WP_171882083.1 | recombination protein NinG | - |
| HG538_RS13660 (HG538_13670) | - | 2828098..2828367 (-) | 270 | WP_113415686.1 | hypothetical protein | - |
| HG538_RS13665 (HG538_13675) | - | 2828360..2828569 (-) | 210 | WP_171882084.1 | protein NinF | - |
| HG538_RS13670 (HG538_13680) | - | 2828529..2828930 (-) | 402 | WP_023486201.1 | hypothetical protein | - |
| HG538_RS13675 (HG538_13685) | - | 2828933..2829108 (-) | 176 | Protein_2675 | NinE family protein | - |
| HG538_RS13680 (HG538_13690) | - | 2829105..2829950 (-) | 846 | WP_052938503.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| HG538_RS13685 (HG538_13695) | - | 2829947..2830387 (-) | 441 | WP_052938504.1 | recombination protein NinB | - |
| HG538_RS13690 (HG538_13700) | - | 2830612..2830932 (-) | 321 | WP_171882085.1 | hypothetical protein | - |
| HG538_RS13695 (HG538_13705) | - | 2831621..2831890 (-) | 270 | WP_001036029.1 | hypothetical protein | - |
| HG538_RS13700 (HG538_13710) | - | 2831890..2833326 (-) | 1437 | WP_171882086.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| HG538_RS13705 (HG538_13715) | - | 2833316..2834215 (-) | 900 | WP_057697610.1 | hypothetical protein | - |
| HG538_RS13710 (HG538_13720) | - | 2834208..2834354 (-) | 147 | WP_000166207.1 | DUF2740 family protein | - |
| HG538_RS13715 (HG538_13725) | - | 2834387..2834683 (-) | 297 | WP_000438527.1 | CII family transcriptional regulator | - |
| HG538_RS13720 (HG538_13730) | - | 2834825..2835040 (-) | 216 | WP_000067727.1 | helix-turn-helix transcriptional regulator | - |
| HG538_RS13725 (HG538_13735) | - | 2835116..2835811 (+) | 696 | WP_016242500.1 | LexA family transcriptional regulator | - |
| HG538_RS13730 (HG538_13740) | - | 2835957..2836179 (+) | 223 | Protein_2686 | hypothetical protein | - |
| HG538_RS13735 (HG538_13745) | - | 2836157..2836429 (+) | 273 | WP_000088201.1 | hypothetical protein | - |
| HG538_RS13740 (HG538_13750) | - | 2836488..2836958 (+) | 471 | WP_000167595.1 | hypothetical protein | - |
| HG538_RS13745 (HG538_13755) | - | 2837141..2838109 (+) | 969 | WP_072971834.1 | cell envelope biogenesis protein TolA | - |
| HG538_RS13750 (HG538_13760) | - | 2838133..2838264 (+) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HG538_RS13755 (HG538_13765) | kil | 2838249..2838401 (+) | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| HG538_RS13760 (HG538_13770) | - | 2838477..2838647 (+) | 171 | WP_000050554.1 | hypothetical protein | - |
| HG538_RS13765 (HG538_13775) | - | 2838656..2839363 (+) | 708 | WP_000365280.1 | Rad52/Rad22 family DNA repair protein | - |
| HG538_RS13770 (HG538_13780) | ssb | 2839364..2839870 (+) | 507 | WP_000168274.1 | single-stranded DNA-binding protein | Machinery gene |
| HG538_RS13775 (HG538_13785) | - | 2839884..2840177 (+) | 294 | WP_001111303.1 | phage anti-RecBCD protein | - |
| HG538_RS13780 (HG538_13790) | - | 2840188..2840352 (+) | 165 | WP_001459566.1 | DUF2737 family protein | - |
| HG538_RS13785 (HG538_13795) | - | 2840349..2840867 (+) | 519 | WP_171882087.1 | hypothetical protein | - |
| HG538_RS13790 (HG538_13800) | - | 2840864..2841133 (+) | 270 | WP_171882088.1 | hypothetical protein | - |
| HG538_RS13795 (HG538_13805) | - | 2841283..2841474 (+) | 192 | WP_000132739.1 | AlpA family transcriptional regulator | - |
| HG538_RS13800 (HG538_13810) | - | 2841455..2842633 (-) | 1179 | WP_001007947.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18731.03 Da Isoelectric Point: 8.4877
>NTDB_id=442453 HG538_RS13770 WP_000168274.1 2839364..2839870(+) (ssb) [Escherichia fergusonii strain HNCF11W]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=442453 HG538_RS13770 WP_000168274.1 2839364..2839870(+) (ssb) [Escherichia fergusonii strain HNCF11W]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTAACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTAACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |