Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HG541_RS03765 | Genome accession | NZ_CP053044 |
| Coordinates | 858454..858951 (-) | Length | 165 a.a. |
| NCBI ID | WP_159242317.1 | Uniprot ID | - |
| Organism | Proteus terrae subsp. cibarius strain HNCF43W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 856487..899116 | 858454..858951 | within | 0 |
Gene organization within MGE regions
Location: 856487..899116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG541_RS03740 (HG541_03740) | - | 856487..856675 (-) | 189 | WP_099660096.1 | helix-turn-helix transcriptional regulator | - |
| HG541_RS03745 (HG541_03745) | - | 856729..857184 (-) | 456 | WP_394350849.1 | SAM-dependent methyltransferase | - |
| HG541_RS03750 (HG541_03750) | - | 857186..857407 (-) | 222 | WP_159242314.1 | hypothetical protein | - |
| HG541_RS03755 (HG541_03755) | - | 857410..857988 (-) | 579 | WP_159242315.1 | hypothetical protein | - |
| HG541_RS03760 (HG541_03760) | - | 857990..858445 (-) | 456 | WP_159242316.1 | hypothetical protein | - |
| HG541_RS03765 (HG541_03765) | ssb | 858454..858951 (-) | 498 | WP_159242317.1 | single-stranded DNA-binding protein | Machinery gene |
| HG541_RS03770 (HG541_03770) | - | 859010..859837 (-) | 828 | WP_159242318.1 | YfdQ family protein | - |
| HG541_RS03775 (HG541_03775) | - | 859903..860277 (-) | 375 | WP_006533955.1 | hypothetical protein | - |
| HG541_RS03780 (HG541_03780) | - | 860688..861182 (+) | 495 | WP_099660100.1 | hypothetical protein | - |
| HG541_RS03785 (HG541_03785) | - | 861394..861597 (-) | 204 | WP_159242319.1 | hypothetical protein | - |
| HG541_RS03790 (HG541_03790) | - | 861950..862612 (-) | 663 | WP_159242320.1 | helix-turn-helix domain-containing protein | - |
| HG541_RS03795 (HG541_03795) | - | 862653..862865 (+) | 213 | WP_109395844.1 | YdaS family helix-turn-helix protein | - |
| HG541_RS03800 (HG541_03800) | - | 862935..863393 (+) | 459 | WP_036900998.1 | YmfL family putative regulatory protein | - |
| HG541_RS03805 (HG541_03805) | - | 863482..863691 (+) | 210 | WP_159242321.1 | hypothetical protein | - |
| HG541_RS03810 (HG541_03810) | - | 863681..863860 (+) | 180 | WP_109391850.1 | DUF4222 domain-containing protein | - |
| HG541_RS03815 (HG541_03815) | - | 863870..864991 (+) | 1122 | WP_159242322.1 | replication protein 15 | - |
| HG541_RS03820 (HG541_03820) | - | 864988..865626 (+) | 639 | WP_159242323.1 | phage N-6-adenine-methyltransferase | - |
| HG541_RS03825 (HG541_03825) | - | 865623..866015 (+) | 393 | WP_159242324.1 | hypothetical protein | - |
| HG541_RS18435 (HG541_03830) | - | 866015..866185 (+) | 171 | WP_023582529.1 | Lar family restriction alleviation protein | - |
| HG541_RS03835 (HG541_03835) | - | 866248..866535 (+) | 288 | WP_328809339.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HG541_RS03840 (HG541_03840) | - | 866649..867452 (+) | 804 | WP_036904909.1 | KilA-N domain-containing protein | - |
| HG541_RS03845 (HG541_03845) | - | 867449..868474 (+) | 1026 | WP_159242325.1 | DUF968 domain-containing protein | - |
| HG541_RS03850 (HG541_03850) | - | 868502..868885 (+) | 384 | WP_159242326.1 | antiterminator Q family protein | - |
| HG541_RS03855 (HG541_03855) | - | 869126..870292 (+) | 1167 | WP_036934641.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| HG541_RS03860 (HG541_03860) | - | 870412..870660 (+) | 249 | WP_115370633.1 | hypothetical protein | - |
| HG541_RS03865 (HG541_03865) | - | 870989..871378 (+) | 390 | WP_109373189.1 | putative holin | - |
| HG541_RS03870 (HG541_03870) | - | 871387..871674 (+) | 288 | WP_226891917.1 | phage holin family protein | - |
| HG541_RS03875 (HG541_03875) | - | 871652..872071 (+) | 420 | WP_115065559.1 | structural protein | - |
| HG541_RS03880 (HG541_03880) | - | 872271..872849 (+) | 579 | WP_115065558.1 | phage antirepressor N-terminal domain-containing protein | - |
| HG541_RS03885 (HG541_03885) | - | 872920..873294 (+) | 375 | WP_159242338.1 | lysis protein | - |
| HG541_RS18440 (HG541_03890) | - | 873541..873744 (-) | 204 | WP_036904935.1 | KTSC domain-containing protein | - |
| HG541_RS03895 (HG541_03895) | - | 874685..875032 (+) | 348 | WP_159242327.1 | HNH endonuclease | - |
| HG541_RS03900 (HG541_03900) | - | 875238..875696 (+) | 459 | WP_017827278.1 | phage terminase small subunit P27 family | - |
| HG541_RS03905 (HG541_03905) | - | 875699..877429 (+) | 1731 | WP_159242328.1 | terminase large subunit | - |
| HG541_RS03910 (HG541_03910) | - | 877439..877618 (+) | 180 | WP_109372933.1 | hypothetical protein | - |
| HG541_RS03915 (HG541_03915) | - | 877618..878847 (+) | 1230 | WP_159242329.1 | phage portal protein | - |
| HG541_RS03920 (HG541_03920) | - | 878825..879469 (+) | 645 | WP_170832166.1 | HK97 family phage prohead protease | - |
| HG541_RS03925 (HG541_03925) | - | 879483..880691 (+) | 1209 | WP_159242330.1 | phage major capsid protein | - |
| HG541_RS03930 (HG541_03930) | - | 880787..881095 (+) | 309 | WP_023582511.1 | head-tail connector protein | - |
| HG541_RS03935 (HG541_03935) | - | 881092..881415 (+) | 324 | WP_023582510.1 | phage head closure protein | - |
| HG541_RS03940 (HG541_03940) | - | 881412..881852 (+) | 441 | WP_159242331.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HG541_RS03945 (HG541_03945) | - | 881849..882184 (+) | 336 | WP_159242332.1 | hypothetical protein | - |
| HG541_RS03950 (HG541_03950) | - | 882250..882717 (+) | 468 | WP_159242333.1 | phage tail tube protein | - |
| HG541_RS03955 (HG541_03955) | - | 882720..883100 (+) | 381 | WP_088495895.1 | phage tail assembly chaperone | - |
| HG541_RS03960 (HG541_03960) | - | 883142..883405 (+) | 264 | WP_226891784.1 | phage tail assembly protein T | - |
| HG541_RS03965 (HG541_03965) | - | 883425..886691 (+) | 3267 | WP_159242335.1 | phage tail tape measure protein | - |
| HG541_RS03970 (HG541_03970) | - | 886694..887026 (+) | 333 | WP_023582503.1 | phage tail protein | - |
| HG541_RS03975 (HG541_03975) | - | 887023..887772 (+) | 750 | WP_069366998.1 | phage minor tail protein L | - |
| HG541_RS03980 (HG541_03980) | - | 887778..888485 (+) | 708 | WP_159242339.1 | C40 family peptidase | - |
| HG541_RS03985 (HG541_03985) | - | 888576..889076 (+) | 501 | WP_023582500.1 | hypothetical protein | - |
| HG541_RS03990 (HG541_03990) | - | 889133..889723 (+) | 591 | WP_171880504.1 | tail assembly protein | - |
| HG541_RS03995 (HG541_03995) | gpJ | 889743..893411 (+) | 3669 | WP_159287616.1 | TipJ family phage tail tip protein | - |
| HG541_RS04000 (HG541_04000) | - | 893425..894921 (+) | 1497 | WP_159242490.1 | hypothetical protein | - |
| HG541_RS04005 (HG541_04005) | - | 895084..895368 (-) | 285 | WP_226891780.1 | helix-turn-helix domain-containing protein | - |
| HG541_RS04010 (HG541_04010) | - | 895759..896133 (-) | 375 | WP_159242488.1 | hypothetical protein | - |
| HG541_RS04015 (HG541_04015) | - | 896199..897425 (-) | 1227 | WP_087803148.1 | tyrosine-type recombinase/integrase | - |
| HG541_RS18295 | - | 897658..897789 (-) | 132 | Protein_785 | integrase | - |
| HG541_RS04020 (HG541_04020) | - | 898123..898662 (+) | 540 | WP_075674158.1 | hypothetical protein | - |
| HG541_RS04025 (HG541_04025) | - | 898808..899116 (-) | 309 | WP_075674159.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18082.54 Da Isoelectric Point: 7.1647
>NTDB_id=442426 HG541_RS03765 WP_159242317.1 858454..858951(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF43W]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVILFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGATKSAGSQLAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVILFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGATKSAGSQLAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
Nucleotide
Download Length: 498 bp
>NTDB_id=442426 HG541_RS03765 WP_159242317.1 858454..858951(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF43W]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGTAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAGTGGCGAGATAAACAAACGGGTGAAAACCGAGAAAAGACAG
AATGGCATCGTGTCATTCTGTTTGGAAAACTCGCAGACATCGCCAGTGGCTATTTGTGCAAAGGCTCCCAAATTTATATT
GAGGGCCAACTACAAACGCGCGAATGGGATGATAACGGTGTGAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGCGG
TTCGATGCAGATGCTAGGTGGTGCTACTAAATCAGCGGGTTCACAGTTGGCACAGCAAAATCAGCCACCAGCTCAACCTC
AAGCCCAAAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTTGCTCCAATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAG
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGTAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAGTGGCGAGATAAACAAACGGGTGAAAACCGAGAAAAGACAG
AATGGCATCGTGTCATTCTGTTTGGAAAACTCGCAGACATCGCCAGTGGCTATTTGTGCAAAGGCTCCCAAATTTATATT
GAGGGCCAACTACAAACGCGCGAATGGGATGATAACGGTGTGAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGCGG
TTCGATGCAGATGCTAGGTGGTGCTACTAAATCAGCGGGTTCACAGTTGGCACAGCAAAATCAGCCACCAGCTCAACCTC
AAGCCCAAAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTTGCTCCAATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.062 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.667 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
42.373 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
42.373 |
100 |
0.455 |