Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HG541_RS01445 Genome accession   NZ_CP053044
Coordinates   325284..325811 (-) Length   175 a.a.
NCBI ID   WP_075673066.1    Uniprot ID   A0A6G6SAY5
Organism   Proteus terrae subsp. cibarius strain HNCF43W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 320284..330811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG541_RS01420 (HG541_01420) - 322621..322992 (+) 372 WP_006536373.1 diacylglycerol kinase -
  HG541_RS01425 (HG541_01425) lexA 323120..323731 (+) 612 WP_023583074.1 transcriptional repressor LexA -
  HG541_RS01430 (HG541_01430) - 323892..324146 (+) 255 WP_075673067.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  HG541_RS01435 (HG541_01435) - 324136..324441 (+) 306 Protein_279 type II toxin-antitoxin system RelE family toxin -
  HG541_RS01440 (HG541_01440) zur 324475..325005 (-) 531 WP_006536370.1 zinc uptake transcriptional repressor Zur -
  HG541_RS01445 (HG541_01445) ssb 325284..325811 (-) 528 WP_075673066.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HG541_RS01450 (HG541_01450) uvrA 326064..328898 (+) 2835 WP_075673065.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18931.97 Da        Isoelectric Point: 4.9468

>NTDB_id=442423 HG541_RS01445 WP_075673066.1 325284..325811(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF43W]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGNQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=442423 HG541_RS01445 WP_075673066.1 325284..325811(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF43W]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAATCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAGTTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTTGTTAACATTGG
CGGCTCAATGCAAATGTTAGGCGGCCGTGGTAACCAAGATGGCGCACCTTCTCAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCACAATCTCGCCCAGCACAACAACCAGCTGCCGCACCAGCG
CCAAACAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6SAY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.514

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

49.162

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.503