Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HG539_RS13140 | Genome accession | NZ_CP053042 |
| Coordinates | 2875011..2875508 (-) | Length | 165 a.a. |
| NCBI ID | WP_159242317.1 | Uniprot ID | - |
| Organism | Proteus terrae subsp. cibarius strain HNCF44W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2873044..2915673 | 2875011..2875508 | within | 0 |
Gene organization within MGE regions
Location: 2873044..2915673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG539_RS13115 (HG539_13150) | - | 2873044..2873232 (-) | 189 | WP_099660096.1 | AlpA family phage regulatory protein | - |
| HG539_RS13120 (HG539_13155) | - | 2873286..2873723 (-) | 438 | WP_159242337.1 | SAM-dependent methyltransferase | - |
| HG539_RS13125 (HG539_13160) | - | 2873743..2873964 (-) | 222 | WP_159242314.1 | hypothetical protein | - |
| HG539_RS13130 (HG539_13165) | - | 2873967..2874545 (-) | 579 | WP_159242315.1 | hypothetical protein | - |
| HG539_RS13135 (HG539_13170) | - | 2874547..2875002 (-) | 456 | WP_159242316.1 | hypothetical protein | - |
| HG539_RS13140 (HG539_13175) | ssb | 2875011..2875508 (-) | 498 | WP_159242317.1 | single-stranded DNA-binding protein | Machinery gene |
| HG539_RS13145 (HG539_13180) | - | 2875567..2876394 (-) | 828 | WP_159242318.1 | DUF2303 family protein | - |
| HG539_RS13150 (HG539_13185) | - | 2876460..2876834 (-) | 375 | WP_006533955.1 | hypothetical protein | - |
| HG539_RS13155 (HG539_13190) | - | 2877245..2877739 (+) | 495 | WP_099660100.1 | hypothetical protein | - |
| HG539_RS13160 (HG539_13195) | - | 2877951..2878154 (-) | 204 | WP_159242319.1 | hypothetical protein | - |
| HG539_RS13165 (HG539_13200) | - | 2878507..2879169 (-) | 663 | WP_159242320.1 | helix-turn-helix transcriptional regulator | - |
| HG539_RS13170 (HG539_13205) | - | 2879210..2879422 (+) | 213 | WP_109395844.1 | YdaS family helix-turn-helix protein | - |
| HG539_RS13175 (HG539_13210) | - | 2879492..2879950 (+) | 459 | WP_036900998.1 | YmfL family putative regulatory protein | - |
| HG539_RS13180 (HG539_13215) | - | 2880039..2880248 (+) | 210 | WP_159242321.1 | hypothetical protein | - |
| HG539_RS13185 (HG539_13220) | - | 2880238..2880417 (+) | 180 | WP_109391850.1 | DUF4222 domain-containing protein | - |
| HG539_RS13190 (HG539_13225) | - | 2880427..2881548 (+) | 1122 | WP_159242322.1 | replication protein 15 | - |
| HG539_RS13195 (HG539_13230) | - | 2881545..2882183 (+) | 639 | WP_159242323.1 | phage N-6-adenine-methyltransferase | - |
| HG539_RS13200 (HG539_13235) | - | 2882180..2882572 (+) | 393 | WP_159242324.1 | hypothetical protein | - |
| HG539_RS13210 (HG539_13245) | - | 2882805..2883092 (+) | 288 | WP_328809339.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HG539_RS13215 (HG539_13250) | - | 2883206..2884009 (+) | 804 | WP_036904909.1 | KilA-N domain-containing protein | - |
| HG539_RS13220 (HG539_13255) | - | 2884006..2885031 (+) | 1026 | WP_159242325.1 | DUF968 domain-containing protein | - |
| HG539_RS13225 (HG539_13260) | - | 2885059..2885442 (+) | 384 | WP_159242326.1 | antiterminator Q family protein | - |
| HG539_RS13230 (HG539_13265) | - | 2885683..2886849 (+) | 1167 | WP_036934641.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| HG539_RS13235 (HG539_13270) | - | 2886969..2887217 (+) | 249 | WP_115370633.1 | hypothetical protein | - |
| HG539_RS13240 (HG539_13275) | - | 2887546..2887935 (+) | 390 | WP_109373189.1 | putative holin | - |
| HG539_RS13245 (HG539_13280) | - | 2887932..2888231 (+) | 300 | WP_115065560.1 | phage holin family protein | - |
| HG539_RS13250 (HG539_13285) | - | 2888209..2888628 (+) | 420 | WP_115065559.1 | structural protein | - |
| HG539_RS13255 (HG539_13290) | - | 2888828..2889406 (+) | 579 | WP_115065558.1 | phage antirepressor N-terminal domain-containing protein | - |
| HG539_RS13260 (HG539_13295) | - | 2889477..2889851 (+) | 375 | WP_159242338.1 | lysis protein | - |
| HG539_RS13270 (HG539_13305) | - | 2891242..2891589 (+) | 348 | WP_159242327.1 | HNH endonuclease | - |
| HG539_RS13275 (HG539_13310) | - | 2891795..2892253 (+) | 459 | WP_017827278.1 | phage terminase small subunit P27 family | - |
| HG539_RS13280 (HG539_13315) | - | 2892256..2893986 (+) | 1731 | WP_159242328.1 | terminase TerL endonuclease subunit | - |
| HG539_RS18785 | - | 2893996..2894175 (+) | 180 | WP_109372933.1 | hypothetical protein | - |
| HG539_RS13285 (HG539_13320) | - | 2894175..2895404 (+) | 1230 | WP_159242329.1 | phage portal protein | - |
| HG539_RS13290 (HG539_13325) | - | 2895382..2896026 (+) | 645 | WP_170832166.1 | HK97 family phage prohead protease | - |
| HG539_RS13295 (HG539_13330) | - | 2896040..2897248 (+) | 1209 | WP_159242330.1 | phage major capsid protein | - |
| HG539_RS13300 (HG539_13335) | - | 2897344..2897652 (+) | 309 | WP_023582511.1 | head-tail connector protein | - |
| HG539_RS13305 (HG539_13340) | - | 2897649..2897972 (+) | 324 | WP_023582510.1 | phage head closure protein | - |
| HG539_RS13310 (HG539_13345) | - | 2897969..2898409 (+) | 441 | WP_159242331.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HG539_RS13315 (HG539_13350) | - | 2898406..2898741 (+) | 336 | WP_159242332.1 | hypothetical protein | - |
| HG539_RS13320 (HG539_13355) | - | 2898807..2899274 (+) | 468 | WP_159242333.1 | phage tail tube protein | - |
| HG539_RS13325 (HG539_13360) | - | 2899277..2899657 (+) | 381 | WP_088495895.1 | phage tail assembly chaperone | - |
| HG539_RS13330 (HG539_13365) | - | 2899699..2899962 (+) | 264 | WP_226891784.1 | DUF4035 domain-containing protein | - |
| HG539_RS13335 (HG539_13370) | - | 2899982..2903248 (+) | 3267 | WP_159242335.1 | phage tail tape measure protein | - |
| HG539_RS13340 (HG539_13375) | - | 2903251..2903583 (+) | 333 | WP_023582503.1 | phage tail protein | - |
| HG539_RS13345 (HG539_13380) | - | 2903577..2904329 (+) | 753 | WP_171729888.1 | phage minor tail protein L | - |
| HG539_RS13350 (HG539_13385) | - | 2904335..2905042 (+) | 708 | WP_159242339.1 | C40 family peptidase | - |
| HG539_RS13355 (HG539_13390) | - | 2905133..2905633 (+) | 501 | WP_023582500.1 | hypothetical protein | - |
| HG539_RS13360 (HG539_13395) | - | 2905690..2906280 (+) | 591 | WP_171880504.1 | tail assembly protein | - |
| HG539_RS13365 (HG539_13400) | - | 2906300..2909968 (+) | 3669 | WP_159287616.1 | phage tail protein | - |
| HG539_RS13370 (HG539_13405) | - | 2909982..2911478 (+) | 1497 | WP_159242490.1 | hypothetical protein | - |
| HG539_RS13375 (HG539_13410) | - | 2911641..2911925 (-) | 285 | WP_226891780.1 | helix-turn-helix transcriptional regulator | - |
| HG539_RS13380 (HG539_13415) | - | 2912316..2912690 (-) | 375 | WP_159242488.1 | hypothetical protein | - |
| HG539_RS13385 (HG539_13420) | - | 2912756..2913982 (-) | 1227 | WP_087803148.1 | site-specific integrase | - |
| HG539_RS18790 | - | 2914215..2914334 (-) | 120 | Protein_2595 | integrase | - |
| HG539_RS13390 (HG539_13425) | - | 2914680..2915219 (+) | 540 | WP_075674158.1 | hypothetical protein | - |
| HG539_RS13395 (HG539_13430) | - | 2915365..2915673 (-) | 309 | WP_075674159.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18082.54 Da Isoelectric Point: 7.1647
>NTDB_id=442417 HG539_RS13140 WP_159242317.1 2875011..2875508(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF44W]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVILFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGATKSAGSQLAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVILFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGATKSAGSQLAQQNQPPAQPQAQSSQPPMDFEDDIPFAPIGLMYPRH
LINVI
Nucleotide
Download Length: 498 bp
>NTDB_id=442417 HG539_RS13140 WP_159242317.1 2875011..2875508(-) (ssb) [Proteus terrae subsp. cibarius strain HNCF44W]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGTAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAGTGGCGAGATAAACAAACGGGTGAAAACCGAGAAAAGACAG
AATGGCATCGTGTCATTCTGTTTGGAAAACTCGCAGACATCGCCAGTGGCTATTTGTGCAAAGGCTCCCAAATTTATATT
GAGGGCCAACTACAAACGCGCGAATGGGATGATAACGGTGTGAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGCGG
TTCGATGCAGATGCTAGGTGGTGCTACTAAATCAGCGGGTTCACAGTTGGCACAGCAAAATCAGCCACCAGCTCAACCTC
AAGCCCAAAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTTGCTCCAATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAG
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGTAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAGTGGCGAGATAAACAAACGGGTGAAAACCGAGAAAAGACAG
AATGGCATCGTGTCATTCTGTTTGGAAAACTCGCAGACATCGCCAGTGGCTATTTGTGCAAAGGCTCCCAAATTTATATT
GAGGGCCAACTACAAACGCGCGAATGGGATGATAACGGTGTGAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGCGG
TTCGATGCAGATGCTAGGTGGTGCTACTAAATCAGCGGGTTCACAGTTGGCACAGCAAAATCAGCCACCAGCTCAACCTC
AAGCCCAAAGTAGTCAACCACCAATGGATTTTGAGGATGATATTCCCTTTGCTCCAATTGGGCTTATGTATCCACGCCAT
TTAATTAATGTGATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.062 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.667 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
42.373 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
42.373 |
100 |
0.455 |