Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HIR79_RS18050 Genome accession   NZ_CP053032
Coordinates   3861330..3861995 (-) Length   221 a.a.
NCBI ID   WP_169959404.1    Uniprot ID   A0A6M4G191
Organism   Halomonas sp. PGE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3856330..3866995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR79_RS18030 (HIR79_18045) fabA 3857761..3858276 (+) 516 WP_169959400.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  HIR79_RS18035 (HIR79_18050) fabB 3858291..3859508 (+) 1218 WP_169959401.1 beta-ketoacyl-ACP synthase I -
  HIR79_RS18040 (HIR79_18055) - 3859633..3860403 (-) 771 WP_169959402.1 lysophospholipid acyltransferase family protein -
  HIR79_RS18045 (HIR79_18060) - 3860400..3861293 (-) 894 WP_169959403.1 sugar nucleotide-binding protein -
  HIR79_RS18050 (HIR79_18065) ssb 3861330..3861995 (-) 666 WP_169959404.1 single-stranded DNA-binding protein Machinery gene
  HIR79_RS18055 (HIR79_18070) - 3862081..3863469 (-) 1389 WP_169959405.1 MFS transporter -
  HIR79_RS18060 (HIR79_18075) uvrA 3863631..3866492 (+) 2862 WP_169959406.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23531.67 Da        Isoelectric Point: 5.2423

>NTDB_id=442330 HIR79_RS18050 WP_169959404.1 3861330..3861995(-) (ssb) [Halomonas sp. PGE1]
MARGVNKVILIGNLGQDPEVRFMPSGAPVANLRLATTDTWMDKQSGQRQERTEWHSLVLFNKLAEIAQQYLKKGSKVYVE
GRLQTRKWQGQDGQDRYSTEIVVNDMQMLDSRGGGDFQGGGQAPQGGYQGGQYGGGAPQQGGGFGGQPQQGGYGGAPQPA
GNFGGGQPQGGGAPQRPAQPQQRPAPPQQGQQQGNQQGNQQGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 666 bp        

>NTDB_id=442330 HIR79_RS18050 WP_169959404.1 3861330..3861995(-) (ssb) [Halomonas sp. PGE1]
ATGGCCCGTGGCGTCAACAAGGTCATTCTGATCGGCAACCTGGGACAGGATCCCGAGGTTCGCTTCATGCCCTCCGGGGC
CCCGGTGGCCAACCTGCGGCTGGCCACCACCGATACCTGGATGGACAAGCAGAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACAGCCTGGTGCTGTTCAACAAGCTGGCCGAGATCGCCCAGCAGTACCTCAAGAAGGGCAGCAAGGTCTACGTCGAG
GGCCGCCTGCAGACCCGCAAGTGGCAGGGTCAGGACGGCCAGGATCGCTACAGCACCGAGATCGTGGTCAACGACATGCA
GATGCTCGACTCTCGTGGCGGCGGTGATTTCCAGGGCGGTGGCCAGGCCCCGCAGGGCGGCTATCAGGGTGGCCAGTACG
GTGGTGGTGCGCCCCAGCAGGGCGGCGGCTTCGGTGGCCAGCCCCAGCAGGGGGGCTACGGCGGCGCGCCGCAGCCGGCC
GGCAACTTCGGCGGCGGCCAGCCCCAGGGTGGCGGTGCTCCCCAGCGTCCGGCCCAGCCCCAGCAGCGCCCCGCGCCGCC
CCAGCAGGGGCAGCAGCAGGGCAACCAGCAGGGCAACCAGCAGGGCAACTACGGGGCGCCGGATCCGGGCAGCTTCGACG
ACTTCGATGACGAGATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4G191

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.214

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.637

100

0.471
  ssb Neisseria gonorrhoeae MS11

42.202

98.643

0.416
  ssb Neisseria meningitidis MC58

40.826

98.643

0.403