Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DB356_RS22375 Genome accession   NZ_CP053030
Coordinates   5163486..5164055 (-) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas congelans strain 508     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5158486..5169055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB356_RS22350 (DB356_23010) - 5158744..5159637 (+) 894 WP_003419594.1 ABC transporter permease subunit -
  DB356_RS22355 (DB356_23015) ugpC 5159634..5160737 (+) 1104 WP_074594964.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  DB356_RS22360 (DB356_23020) - 5160744..5161505 (+) 762 WP_010438227.1 glycerophosphoryl diester phosphodiesterase -
  DB356_RS22365 (DB356_23025) - 5161502..5162245 (+) 744 WP_003317091.1 inositol monophosphatase family protein -
  DB356_RS22370 (DB356_23030) - 5162245..5163357 (+) 1113 WP_214423259.1 endo-1,4-beta-xylanase -
  DB356_RS22375 (DB356_23035) ssb 5163486..5164055 (-) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  DB356_RS22380 (DB356_23040) - 5164065..5165459 (-) 1395 WP_096125310.1 MFS transporter -
  DB356_RS22385 (DB356_23045) uvrA 5165589..5168423 (+) 2835 WP_010438214.1 excinuclease ABC subunit UvrA -
  DB356_RS22390 (DB356_23050) bfr 5168518..5168982 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=442306 DB356_RS22375 WP_003426596.1 5163486..5164055(-) (ssb) [Pseudomonas congelans strain 508]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=442306 DB356_RS22375 WP_003426596.1 5163486..5164055(-) (ssb) [Pseudomonas congelans strain 508]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACTGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGTGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGTCCACAGCAGTCGGCGCCGCAGCAGTCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGATTTCGATAGCTTTGATGATGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444