Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBV21_RS21425 Genome accession   NZ_CP053029
Coordinates   4999193..4999762 (-) Length   189 a.a.
NCBI ID   WP_003426596.1    Uniprot ID   A0A0K8M6E3
Organism   Pseudomonas congelans strain TLP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4994193..5004762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS21415 (DBV21_22025) - 4995818..4996003 (-) 186 WP_214347734.1 hypothetical protein -
  DBV21_RS21420 (DBV21_22030) - 4996206..4997963 (+) 1758 WP_214347737.1 ABC transporter ATP-binding protein -
  DBV21_RS21425 (DBV21_22035) ssb 4999193..4999762 (-) 570 WP_003426596.1 single-stranded DNA-binding protein Machinery gene
  DBV21_RS21430 (DBV21_22040) - 4999772..5001166 (-) 1395 WP_214347740.1 MFS transporter -
  DBV21_RS21435 (DBV21_22045) uvrA 5001296..5004130 (+) 2835 WP_010438214.1 excinuclease ABC subunit UvrA -
  DBV21_RS21440 (DBV21_22050) bfr 5004225..5004689 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20974.10 Da        Isoelectric Point: 5.9404

>NTDB_id=442275 DBV21_RS21425 WP_003426596.1 4999193..4999762(-) (ssb) [Pseudomonas congelans strain TLP2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=442275 DBV21_RS21425 WP_003426596.1 4999193..4999762(-) (ssb) [Pseudomonas congelans strain TLP2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGTGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCGCGTCCACAACAGTCGGCGCCGCAGCAGTCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGACTCGCGTCCAGCGCCGCAGCAACAAGCGCCGCAGCCGGCTGCTGATTTCGACAGCTTTGATGATGATAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8M6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.208

100

0.561
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.476
  ssb Neisseria meningitidis MC58

44.681

99.471

0.444
  ssb Neisseria gonorrhoeae MS11

44.681

99.471

0.444